Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G29210.1 | KRH24737 | AT2G29210.1 | 21798944 |
| AT2G29210.1 | KRH29744 | AT2G29210.1 | 21798944 |
| AT2G29210.1 | KRH10674 | AT4G33690.1 | 21798944 |
| AT2G29210.1 | KRH21674 | AT4G33690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH29744 | Soybean | nucleus | 88.43 | 85.92 |
| GSMUA_Achr9P03820_001 | Banana | cytosol | 7.19 | 78.05 |
| VIT_06s0004g05220.t01 | Wine grape | nucleus | 49.1 | 47.4 |
| PGSC0003DMT400071935 | Potato | nucleus | 42.02 | 42.4 |
| Solyc09g030390.2.1 | Tomato | nucleus | 43.71 | 42.24 |
| CDY65665 | Canola | nucleus | 36.97 | 40.27 |
| AT2G29210.1 | Thale cress | nucleus | 38.88 | 39.41 |
| CDY45430 | Canola | nucleus | 36.18 | 38.38 |
| Os03t0270200-01 | Rice | nucleus | 35.73 | 37.86 |
| Bra018407.1-P | Field mustard | nucleus | 35.62 | 37.56 |
| GSMUA_Achr10P... | Banana | nucleus | 34.16 | 36.02 |
| TraesCS4B01G209700.1 | Wheat | nucleus | 33.37 | 35.96 |
| TraesCS4A01G094800.1 | Wheat | nucleus | 33.26 | 35.92 |
| HORVU4Hr1G060270.6 | Barley | nucleus | 33.26 | 35.88 |
| TraesCS4D01G210400.1 | Wheat | nucleus | 33.26 | 35.84 |
| KXG39705 | Sorghum | nucleus | 34.94 | 35.34 |
| Zm00001d028579_P027 | Maize | nucleus | 35.51 | 34.88 |
| Zm00001d047831_P001 | Maize | nucleus | 8.65 | 21.57 |
Protein Annotations
| Gene3D:1.20.1390.10 | EntrezGene:100810238 | MapMan:17.3.1.2.2 | EMBL:ACUP02007184 | ncoils:Coil | EnsemblPlantsGene:GLYMA_12G059700 |
| GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | UniProt:I1LQL7 |
| InterPro:IPR002483 | EnsemblPlants:KRH24737 | ProteinID:KRH24737 | ProteinID:KRH24737.1 | PFAM:PF01480 | PFscan:PS51025 |
| InterPro:PWI_dom | InterPro:PWI_dom_sf | SMART:SM00311 | SUPFAM:SSF101233 | UniParc:UPI00023D04CC | SEG:seg |
Description
hypothetical protein
Coordinates
chr12:-:4313016..4319308
Molecular Weight (calculated)
103502.0 Da
IEP (calculated)
11.661
GRAVY (calculated)
-1.622
Length
890 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGFFRGTS ADQDTRFSNK QAKLMKSQKF APELEHLVDM TKVNMEVIKP WITRRVTELL GFEDEVLINF IHSLLDAKEV NGKEVQIQIT GFMEKNTGKF
101: MKELWMLLLS AQKNASGVPQ QFLDAKEEEL LKKKAESDLI ASEIQRKKDK EGREIMEERL KKLDGGFDSK DNDTASDPTL KPRDSGYYER DGKETDKRNG
201: VRARSRFSRS PHSPAVSTSP HRGSPSRSMS KSFSNSRSYS GGRHRSRSIS RSPEARGRSR SFERIRHSPR RRSISPHRHS PRRSPYRRIP YSRRSRSPSP
301: VRRRMHSPVH RRSPSFRRRR SPSLVRRRRP PSPVRRRRSP SPVRRRRSPS PGRRRRSPSP GPRHRSPSPG PRHKSPSPGR HHRSPSPLGR RRSLSPRRRR
401: SVVTRHRSPS LVRRIPPTNV RRRSDSPMQS PSPIRRRYGS RTPPHSPSPL RRRSPIPGKQ RSPSISPQRS PRDEWSSQSP IRRVSPSPIR KNSPRHKRSP
501: LPSSMGRVRT QERLSSETRQ PSSPLGSTRR DKSGKASHYK SQDSMSTQEK SPIRSVSPEE RSETSSEGRS PHESPMKQRR EKLSNERSMS PLKKQRTQKP
601: SRDSPDTREE AEETYYSRES RDPKMNSSQK ISKHSPISKR KGSPAKFRHE DFSPERVSGH TASEHHYDND DWSKKGREIK RDKSSRQDNE FPAQKSSINK
701: ETFSREKPQE SYAVDVKKSD DKDQSRSNYA KSSGRHHKSE ATQDLVGKGD RVNHSASYDS VSEDSGKHRR EGKDRKRHKR SEKKYASSDE DYSDDSELED
801: RKEAKRRRKE EKKLRKEEKR RRREEKRRRR EERRAEKLKM KSKTDDISDD EEAKQMGYHQ SDSEDEQKKL EIELRNKALE SLKAKRGVNN
101: MKELWMLLLS AQKNASGVPQ QFLDAKEEEL LKKKAESDLI ASEIQRKKDK EGREIMEERL KKLDGGFDSK DNDTASDPTL KPRDSGYYER DGKETDKRNG
201: VRARSRFSRS PHSPAVSTSP HRGSPSRSMS KSFSNSRSYS GGRHRSRSIS RSPEARGRSR SFERIRHSPR RRSISPHRHS PRRSPYRRIP YSRRSRSPSP
301: VRRRMHSPVH RRSPSFRRRR SPSLVRRRRP PSPVRRRRSP SPVRRRRSPS PGRRRRSPSP GPRHRSPSPG PRHKSPSPGR HHRSPSPLGR RRSLSPRRRR
401: SVVTRHRSPS LVRRIPPTNV RRRSDSPMQS PSPIRRRYGS RTPPHSPSPL RRRSPIPGKQ RSPSISPQRS PRDEWSSQSP IRRVSPSPIR KNSPRHKRSP
501: LPSSMGRVRT QERLSSETRQ PSSPLGSTRR DKSGKASHYK SQDSMSTQEK SPIRSVSPEE RSETSSEGRS PHESPMKQRR EKLSNERSMS PLKKQRTQKP
601: SRDSPDTREE AEETYYSRES RDPKMNSSQK ISKHSPISKR KGSPAKFRHE DFSPERVSGH TASEHHYDND DWSKKGREIK RDKSSRQDNE FPAQKSSINK
701: ETFSREKPQE SYAVDVKKSD DKDQSRSNYA KSSGRHHKSE ATQDLVGKGD RVNHSASYDS VSEDSGKHRR EGKDRKRHKR SEKKYASSDE DYSDDSELED
801: RKEAKRRRKE EKKLRKEEKR RRREEKRRRR EERRAEKLKM KSKTDDISDD EEAKQMGYHQ SDSEDEQKKL EIELRNKALE SLKAKRGVNN
001: MSGGFFRGTS AEQDTRFSNK QAKLMKSQKF APELENLVDI TKVKMDVMKP WIATRVTELL GIEDEVLINF IYGLLDGKVV NGKEIQITLT GFMEKNTGKF
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
501: ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
601: RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
701: RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
801: KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG EESDPKRLEI ELRNKALESL KAKKGISH
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
501: ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
601: RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
701: RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
801: KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG EESDPKRLEI ELRNKALESL KAKKGISH
Arabidopsis Description
At2g29210/F16P2.41 [Source:UniProtKB/TrEMBL;Acc:Q8L7W3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.