Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra011462.1-P | |
| Bra018407.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G29210.1 | Bra018407.1-P | AT2G29210.1 | 21798944 |
| AT2G29210.1 | Bra011462.1-P | AT4G33690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45430 | Canola | nucleus | 94.67 | 95.23 |
| GSMUA_Achr9P03820_001 | Banana | cytosol | 7.58 | 78.05 |
| AT2G29210.1 | Thale cress | nucleus | 60.07 | 57.74 |
| VIT_06s0004g05220.t01 | Wine grape | nucleus | 39.1 | 35.79 |
| Os03t0270200-01 | Rice | nucleus | 35.55 | 35.71 |
| KRH29744 | Soybean | nucleus | 38.74 | 35.7 |
| KRH24737 | Soybean | nucleus | 37.56 | 35.62 |
| PGSC0003DMT400071935 | Potato | nucleus | 36.73 | 35.15 |
| Solyc09g030390.2.1 | Tomato | nucleus | 36.97 | 33.88 |
| TraesCS4A01G094800.1 | Wheat | nucleus | 33.06 | 33.86 |
| TraesCS4B01G209700.1 | Wheat | nucleus | 33.06 | 33.78 |
| KXG39705 | Sorghum | nucleus | 35.19 | 33.75 |
| TraesCS4D01G210400.1 | Wheat | nucleus | 32.94 | 33.66 |
| HORVU4Hr1G060270.6 | Barley | nucleus | 32.7 | 33.45 |
| Zm00001d028579_P027 | Maize | nucleus | 34.95 | 32.56 |
| GSMUA_Achr10P... | Banana | nucleus | 30.33 | 30.33 |
| Zm00001d047831_P001 | Maize | nucleus | 8.77 | 20.73 |
Protein Annotations
| EnsemblPlants:Bra018407.1 | EnsemblPlants:Bra018407.1-P | EnsemblPlantsGene:Bra018407 | Gene3D:1.20.1390.10 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR002483 | InterPro:PWI_dom | InterPro:PWI_dom_sf |
| ncoils:Coil | PFAM:PF01480 | PFscan:PS51025 | SEG:seg | SMART:SM00311 | SUPFAM:SSF101233 |
| UniParc:UPI0002547D7A | UniProt:M4DPG6 | MapMan:17.3.1.2.2 | : | : | : |
Description
AT2G29210 (E=3e-056) | splicing factor PWI domain-containing protein
Coordinates
chrA05:-:8009691..8013035
Molecular Weight (calculated)
96954.9 Da
IEP (calculated)
12.228
GRAVY (calculated)
-1.528
Length
844 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGFFRGTT ADQDTRFSNK QAKLMKSQKF ASELETLVDV SKVKMDVMKP WIATRVTELL GFEDEVLINF IYGLLDNKVV NGKEIQIAIT GFMEKNTVKF
101: MKELWTLLLS AQSNSSGVPQ QFLDASVAET IKFKEQARKK AEADENNKLV NEIGRRKCYE DDIQGKIDSG VEHKVTNAME AKPSRDRPED ERKVDEKVGG
201: ANERRRFTFE VDQQNKFRIK KFFWLILYNS GRKSRSLSRS SDASISPRKR RPSYSRRRSR SRSLSRSLSP RRRRVRSPYG SRSRSPIRRH RSPSPQRRRR
301: VSTPERRRQS SPPSRRRRSP SPPVRRRRSP SPPAKRRRSP SPSARRRRSP SPLARKRRSP SPPVRRRRSP SPPARRQRSP LPFRRRRSPS PVARRRRSPS
401: PLYRRNRSRS RSPLAKRERS DSPGRSPSLV GSRRAPAGQR LPSPPARPRL PSPPAGQRLP SPPPRRAGSP SPMRLGGPQS ANNLKSPSSS SLSPPGRKNG
501: LPSPPVRRRR SLTPARERGS LSPAGRPVAK SPSHDKQGGS MSPVRGRGRS PPSRHQKARS PVRRRSPKPV TRRSQRSPSG SRSPDDSRRR RSPSWSRSSS
601: RSPSPPVRRR PPSPSGRKHL RDRRSPGHPS EMRDREDRDQ KSKLSRKQLP ETVQEVGRVE HAKAQERKSE KLPERRSSHR MHHGSQMSPV SDKDFGRVEN
701: VEGKRQRPSQ VEKEDNSDLD AKLNSDSKDK KRRKTKRSER DEAASDSNGS SDSDLEDRKE AKRRRKEEKK TKKEEKKRRR EERRRKREER RGEKQKLKNR
801: EYSDSSEGEA EKSKNGEESD PKRLEIELRN KALESLKAKK GISH
101: MKELWTLLLS AQSNSSGVPQ QFLDASVAET IKFKEQARKK AEADENNKLV NEIGRRKCYE DDIQGKIDSG VEHKVTNAME AKPSRDRPED ERKVDEKVGG
201: ANERRRFTFE VDQQNKFRIK KFFWLILYNS GRKSRSLSRS SDASISPRKR RPSYSRRRSR SRSLSRSLSP RRRRVRSPYG SRSRSPIRRH RSPSPQRRRR
301: VSTPERRRQS SPPSRRRRSP SPPVRRRRSP SPPAKRRRSP SPSARRRRSP SPLARKRRSP SPPVRRRRSP SPPARRQRSP LPFRRRRSPS PVARRRRSPS
401: PLYRRNRSRS RSPLAKRERS DSPGRSPSLV GSRRAPAGQR LPSPPARPRL PSPPAGQRLP SPPPRRAGSP SPMRLGGPQS ANNLKSPSSS SLSPPGRKNG
501: LPSPPVRRRR SLTPARERGS LSPAGRPVAK SPSHDKQGGS MSPVRGRGRS PPSRHQKARS PVRRRSPKPV TRRSQRSPSG SRSPDDSRRR RSPSWSRSSS
601: RSPSPPVRRR PPSPSGRKHL RDRRSPGHPS EMRDREDRDQ KSKLSRKQLP ETVQEVGRVE HAKAQERKSE KLPERRSSHR MHHGSQMSPV SDKDFGRVEN
701: VEGKRQRPSQ VEKEDNSDLD AKLNSDSKDK KRRKTKRSER DEAASDSNGS SDSDLEDRKE AKRRRKEEKK TKKEEKKRRR EERRRKREER RGEKQKLKNR
801: EYSDSSEGEA EKSKNGEESD PKRLEIELRN KALESLKAKK GISH
001: MSGGFFRGTS AEQDTRFSNK QAKLMKSQKF APELENLVDI TKVKMDVMKP WIATRVTELL GIEDEVLINF IYGLLDGKVV NGKEIQITLT GFMEKNTGKF
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPMRIGGSH AANHLESPSP SSLSPPGRKK
501: VLPSPPVRRR RSLTPDEERV SLSQGGRHTS PSHIKQDGSM SPVRGRGKSS PSSRHQKARS PVRRRSPTPV NRRSRRSSSA SRSPDRRRRR SPSSSRSPSR
601: SRSPPVLHRS PSPRGRKHQR ERRSPGRLSE EQDRVQNSKL LKRTSVPDTD KRKQLPEKLL EVGRVEHYKE QERKSDKLSE KRSVHRHHGS QMSPVENSEG
701: RSRPVSSKVK DSEQVEKEDN SDLDANLSCD SKDTIRHQIK DKNRRKNKRS SREEVSSDDN GSSDSDVDDR KEAKRRRKEE KKTRKEEKKR RREERHRKRE
801: ERRGGKEKHK KQELSDTSEG EVEARPKIKK GEESDPKRLE IELRNKALES LKAKKGISH
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPMRIGGSH AANHLESPSP SSLSPPGRKK
501: VLPSPPVRRR RSLTPDEERV SLSQGGRHTS PSHIKQDGSM SPVRGRGKSS PSSRHQKARS PVRRRSPTPV NRRSRRSSSA SRSPDRRRRR SPSSSRSPSR
601: SRSPPVLHRS PSPRGRKHQR ERRSPGRLSE EQDRVQNSKL LKRTSVPDTD KRKQLPEKLL EVGRVEHYKE QERKSDKLSE KRSVHRHHGS QMSPVENSEG
701: RSRPVSSKVK DSEQVEKEDN SDLDANLSCD SKDTIRHQIK DKNRRKNKRS SREEVSSDDN GSSDSDVDDR KEAKRRRKEE KKTRKEEKKR RREERHRKRE
801: ERRGGKEKHK KQELSDTSEG EVEARPKIKK GEESDPKRLE IELRNKALES LKAKKGISH
Arabidopsis Description
At2g29210/F16P2.41 [Source:UniProtKB/TrEMBL;Acc:Q8L7W3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.