Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g106560.2.1 | |
| Solyc09g030390.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G29210.1 | Solyc09g030390.2.1 | AT2G29210.1 | 21798944 |
| AT2G29210.1 | Solyc01g106560.2.1 | AT4G33690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400071935 | Potato | nucleus | 79.04 | 82.54 |
| GSMUA_Achr9P03820_001 | Banana | cytosol | 7.27 | 81.71 |
| VIT_06s0004g05220.t01 | Wine grape | nucleus | 47.88 | 47.83 |
| KRH24737 | Soybean | nucleus | 42.24 | 43.71 |
| KRH29744 | Soybean | nucleus | 41.8 | 42.03 |
| CDY65665 | Canola | nucleus | 34.09 | 38.43 |
| AT2G29210.1 | Thale cress | nucleus | 36.48 | 38.27 |
| Os03t0270200-01 | Rice | nucleus | 34.2 | 37.5 |
| CDY45430 | Canola | nucleus | 33.88 | 37.19 |
| Bra018407.1-P | Field mustard | nucleus | 33.88 | 36.97 |
| KXG39705 | Sorghum | nucleus | 34.2 | 35.8 |
| Zm00001d028579_P027 | Maize | nucleus | 34.74 | 35.32 |
| GSMUA_Achr10P... | Banana | nucleus | 31.6 | 34.48 |
| TraesCS4B01G209700.1 | Wheat | nucleus | 30.84 | 34.38 |
| TraesCS4D01G210400.1 | Wheat | nucleus | 30.62 | 34.14 |
| TraesCS4A01G094800.1 | Wheat | nucleus | 30.51 | 34.1 |
| HORVU4Hr1G060270.6 | Barley | nucleus | 30.29 | 33.82 |
| Zm00001d047831_P001 | Maize | nucleus | 9.45 | 24.37 |
Protein Annotations
| EnsemblPlants:Solyc09g030390.2.1 | EnsemblPlantsGene:Solyc09g030390.2 | Gene3D:1.20.1390.10 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR002483 | InterPro:PWI_dom | InterPro:PWI_dom_sf | ncoils:Coil |
| PFAM:PF01480 | PFscan:PS51025 | SEG:seg | SMART:SM00311 | SUPFAM:SSF101233 | UniParc:UPI000276C6F0 |
| UniProt:K4CSJ6 | MapMan:17.3.1.2.2 | : | : | : | : |
Description
No Description!
Coordinates
chr9:-:31890316..31896894
Molecular Weight (calculated)
108099.0 Da
IEP (calculated)
11.790
GRAVY (calculated)
-1.556
Length
921 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGFFRGTS AEQDTRFSNK QAKLLKSQKF APELEHLVDM TKVKMDVIKP WIAKRVTELI GFEDEVLINF IYSLLERKVA NGKELQISLT GFMERNTAKF
101: MKELWALLLS AQNNASGVPQ QFLEAKEEEM RNNKAEMDRI ANEIQKKKER DNRELNQEKR KKMDDYGSDL RQKNTSREPT PKQQLQVRLM DNLDPVERNG
201: SSVRNRVSKS PRSADHSLSP RKSRPISKSF SNSRSYSGER HRSRSTSGSP EERRRRSLSS ERAYRSAPKC SVSPRRKHSP RQSHSPPRHR RRSTSRVRRR
301: SPSPARYRRH SPFQRRSRSP LRRRSRSPLR RRSRSPLQRR SRSPLRRRSR SPLRRRSRSP IRRRSRSSHR HRSRSPIWRR SRSPIWCRSR SPSRHSPVRY
401: RSRSPFKCQS PLRRRTPSPT QRRSPSPVSR GYHRSPLSPR QRSPFLAQRK TSIFGRKRSL TPARRSLSSQ ESLSPSPIYR RSPSPIRKRI SKNERSPFQS
501: PRGRIRSREK YSSIRYASPV KTEAHKGSRS LERRRSSSGS PQKRIYDRKD SREKDLPLPP QLSRSPSVPE SPHRSRSDSE SPPTKRGRSP SEDRGPRSTS
601: NPREIKTIDF DSLSPSKLRE QKVSSDISEK IADQKEMNHS REAFEHKPRS SRKIPTTPNP YKDLGKRFVQ KEFSDIHSHS DQLESRKRNE AIKSEKFSGT
701: MQHSKELDKQ KSPSTHRHSH SVKRLKESYD GESVKADKEN LSHTNDTKGK ELYVESEAPL TSSKKVEQND LSSKEGSGFE ESEKRRAKIK DKRKHKRSDR
801: YESTSDDSFD SDVEDRKEAK KRRKEERRLK KEEKRRRREE RRHRKEERRS QKRKSKSVNA ISSPSDTERN PNNRASDDEH LREEYQHGCK IEESESLQKR
901: LEIELREKAL ESLRAKKGVS H
101: MKELWALLLS AQNNASGVPQ QFLEAKEEEM RNNKAEMDRI ANEIQKKKER DNRELNQEKR KKMDDYGSDL RQKNTSREPT PKQQLQVRLM DNLDPVERNG
201: SSVRNRVSKS PRSADHSLSP RKSRPISKSF SNSRSYSGER HRSRSTSGSP EERRRRSLSS ERAYRSAPKC SVSPRRKHSP RQSHSPPRHR RRSTSRVRRR
301: SPSPARYRRH SPFQRRSRSP LRRRSRSPLR RRSRSPLQRR SRSPLRRRSR SPLRRRSRSP IRRRSRSSHR HRSRSPIWRR SRSPIWCRSR SPSRHSPVRY
401: RSRSPFKCQS PLRRRTPSPT QRRSPSPVSR GYHRSPLSPR QRSPFLAQRK TSIFGRKRSL TPARRSLSSQ ESLSPSPIYR RSPSPIRKRI SKNERSPFQS
501: PRGRIRSREK YSSIRYASPV KTEAHKGSRS LERRRSSSGS PQKRIYDRKD SREKDLPLPP QLSRSPSVPE SPHRSRSDSE SPPTKRGRSP SEDRGPRSTS
601: NPREIKTIDF DSLSPSKLRE QKVSSDISEK IADQKEMNHS REAFEHKPRS SRKIPTTPNP YKDLGKRFVQ KEFSDIHSHS DQLESRKRNE AIKSEKFSGT
701: MQHSKELDKQ KSPSTHRHSH SVKRLKESYD GESVKADKEN LSHTNDTKGK ELYVESEAPL TSSKKVEQND LSSKEGSGFE ESEKRRAKIK DKRKHKRSDR
801: YESTSDDSFD SDVEDRKEAK KRRKEERRLK KEEKRRRREE RRHRKEERRS QKRKSKSVNA ISSPSDTERN PNNRASDDEH LREEYQHGCK IEESESLQKR
901: LEIELREKAL ESLRAKKGVS H
001: MSGGFFRGTS AEQDTRFSNK QAKLMKSQKF APELENLVDI TKVKMDVMKP WIATRVTELL GIEDEVLINF IYGLLDGKVV NGKEIQITLT GFMEKNTGKF
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
501: ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
601: RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
701: RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
801: KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG EESDPKRLEI ELRNKALESL KAKKGISH
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
501: ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
601: RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
701: RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
801: KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG EESDPKRLEI ELRNKALESL KAKKGISH
Arabidopsis Description
At2g29210/F16P2.41 [Source:UniProtKB/TrEMBL;Acc:Q8L7W3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.