Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G29210.1 | CDY45430 | AT2G29210.1 | 21798944 |
| AT2G29210.1 | CDY65665 | AT2G29210.1 | 21798944 |
| AT2G29210.1 | CDX68998 | AT4G33690.1 | 21798944 |
| AT2G29210.1 | CDX75374 | AT4G33690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45430 | Canola | nucleus | 86.29 | 84.03 |
| GSMUA_Achr9P03820_001 | Banana | cytosol | 7.83 | 78.05 |
| AT2G29210.1 | Thale cress | nucleus | 62.91 | 58.54 |
| KRH24737 | Soybean | nucleus | 40.27 | 36.97 |
| KRH29744 | Soybean | nucleus | 41.0 | 36.57 |
| VIT_06s0004g05220.t01 | Wine grape | nucleus | 40.27 | 35.68 |
| PGSC0003DMT400071935 | Potato | nucleus | 37.7 | 34.92 |
| Os03t0270200-01 | Rice | nucleus | 35.86 | 34.88 |
| Solyc09g030390.2.1 | Tomato | nucleus | 38.43 | 34.09 |
| TraesCS4A01G094800.1 | Wheat | nucleus | 33.17 | 32.89 |
| KXG39705 | Sorghum | nucleus | 35.37 | 32.84 |
| TraesCS4B01G209700.1 | Wheat | nucleus | 32.93 | 32.57 |
| TraesCS4D01G210400.1 | Wheat | nucleus | 32.93 | 32.57 |
| HORVU4Hr1G060270.6 | Barley | nucleus | 32.68 | 32.36 |
| Zm00001d028579_P027 | Maize | nucleus | 35.5 | 32.01 |
| GSMUA_Achr10P... | Banana | nucleus | 31.58 | 30.57 |
| Zm00001d047831_P001 | Maize | nucleus | 8.57 | 19.61 |
Protein Annotations
| EnsemblPlants:CDY65665 | EnsemblPlantsGene:GSBRNA2T00047954001 | Gene3D:1.20.1390.10 | GO:A0A078JGM9 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR002483 | InterPro:PWI_dom | InterPro:PWI_dom_sf |
| ncoils:Coil | PFAM:PF01480 | PFscan:PS51025 | ProteinID:CDY65665 | ProteinID:CDY65665.1 | SEG:seg |
| SMART:SM00311 | SUPFAM:SSF101233 | UniParc:UPI0004EEC71A | UniProt:A0A078JGM9 | MapMan:17.3.1.2.2 | : |
Description
BnaC04g54780DBnaC04g54780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGM9]
Coordinates
chrLK034884:-:7324..11077
Molecular Weight (calculated)
93415.4 Da
IEP (calculated)
12.184
GRAVY (calculated)
-1.566
Length
817 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGFFRGTT ADQDTRFSNK QAKLMKSQKF ASELETLVDV SKVKMDVMKP WIATRVTELL GFEDEVLINF IYGLLDKKVV NGKEIQIAIT GFMEKNTVKF
101: MKELWTLLLS AQSNSSGIPQ QFLDATVAET KRLQDEARKK ADENNQLVNE IGKRKCYEDD IQGKIDSGVE HKVSNAMDAK PSRDRPEDDR KADEKVGVNE
201: RRRGSRSRSI SRTNSGSRSY SGGRKSRSLS RSSDASISPR KRRPSYSRRR SRSRSLSRSL SPRRRSIRSP YGSRSRSPIR RRRSPSPQRR RRVSTPETRR
301: QSSPPSRRRR SPSPPVRRRR SPSPPAKRRR SPSPPAKRRR SPSPPAKRRR SPSPPARRQR SPLPFRRRRS PSPVARRRRS PSPLYRRNRS RSRSPLAKRE
401: RSDSPGRSPS LVGSRRAPAG QRLPSPPAGQ RLPSPPPRRA GSPSPMRLGG PQSANHPKSP SPSSLSPPGR KNGLPCPPVR RRRSLTPAKE RGSLSPAGRP
501: VAKSPSHDKQ GGSMSPVRGR GRSPPSRHQK ARSPVRRRSP KPVNRRSRRS PSGSRSPDDS RRRRSPSWSR SSSRSPSPPV RRRSPSPSGR KHPRDRRSLG
601: HPSEVRDRED RDQKSKLSRK QLPEMVQEVG RVEHAKEQER KREKLPERRS SHRMHHGSQM SPVSDKDFCR VENVEGKRQP PSQVEKEDNS DLDAKLNSDS
701: KDKRRRKTKR SERDEAASDS NGSSDSDLED RKEAKRRRKE EKKTKKEEKK RRREERRRKR EERRDEKLKL KNRGYSDSSE GEAEKSKNGE ESDPKRLEIE
801: LRNKALESLK AKKGISH
101: MKELWTLLLS AQSNSSGIPQ QFLDATVAET KRLQDEARKK ADENNQLVNE IGKRKCYEDD IQGKIDSGVE HKVSNAMDAK PSRDRPEDDR KADEKVGVNE
201: RRRGSRSRSI SRTNSGSRSY SGGRKSRSLS RSSDASISPR KRRPSYSRRR SRSRSLSRSL SPRRRSIRSP YGSRSRSPIR RRRSPSPQRR RRVSTPETRR
301: QSSPPSRRRR SPSPPVRRRR SPSPPAKRRR SPSPPAKRRR SPSPPAKRRR SPSPPARRQR SPLPFRRRRS PSPVARRRRS PSPLYRRNRS RSRSPLAKRE
401: RSDSPGRSPS LVGSRRAPAG QRLPSPPAGQ RLPSPPPRRA GSPSPMRLGG PQSANHPKSP SPSSLSPPGR KNGLPCPPVR RRRSLTPAKE RGSLSPAGRP
501: VAKSPSHDKQ GGSMSPVRGR GRSPPSRHQK ARSPVRRRSP KPVNRRSRRS PSGSRSPDDS RRRRSPSWSR SSSRSPSPPV RRRSPSPSGR KHPRDRRSLG
601: HPSEVRDRED RDQKSKLSRK QLPEMVQEVG RVEHAKEQER KREKLPERRS SHRMHHGSQM SPVSDKDFCR VENVEGKRQP PSQVEKEDNS DLDAKLNSDS
701: KDKRRRKTKR SERDEAASDS NGSSDSDLED RKEAKRRRKE EKKTKKEEKK RRREERRRKR EERRDEKLKL KNRGYSDSSE GEAEKSKNGE ESDPKRLEIE
801: LRNKALESLK AKKGISH
001: MSGGFFRGTS AEQDTRFSNK QAKLMKSQKF APELENLVDI TKVKMDVMKP WIATRVTELL GIEDEVLINF IYGLLDGKVV NGKEIQITLT GFMEKNTGKF
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPMRIGGSH AANHLESPSP SSLSPPGRKK
501: VLPSPPVRRR RSLTPDEERV SLSQGGRHTS PSHIKQDGSM SPVRGRGKSS PSSRHQKARS PVRRRSPTPV NRRSRRSSSA SRSPDRRRRR SPSSSRSPSR
601: SRSPPVLHRS PSPRGRKHQR ERRSPGRLSE EQDRVQNSKL LKRTSVPDTD KRKQLPEKLL EVGRVEHYKE QERKSDKLSE KRSVHRHHGS QMSPVENSEG
701: RSRPVSSKVK DSEQVEKEDN SDLDANLSCD SKDTIRHQIK DKNRRKNKRS SREEVSSDDN GSSDSDVDDR KEAKRRRKEE KKTRKEEKKR RREERHRKRE
801: ERRGGKEKHK KQELSDTSEG EVEARPKIKK GEESDPKRLE IELRNKALES LKAKKGISH
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPMRIGGSH AANHLESPSP SSLSPPGRKK
501: VLPSPPVRRR RSLTPDEERV SLSQGGRHTS PSHIKQDGSM SPVRGRGKSS PSSRHQKARS PVRRRSPTPV NRRSRRSSSA SRSPDRRRRR SPSSSRSPSR
601: SRSPPVLHRS PSPRGRKHQR ERRSPGRLSE EQDRVQNSKL LKRTSVPDTD KRKQLPEKLL EVGRVEHYKE QERKSDKLSE KRSVHRHHGS QMSPVENSEG
701: RSRPVSSKVK DSEQVEKEDN SDLDANLSCD SKDTIRHQIK DKNRRKNKRS SREEVSSDDN GSSDSDVDDR KEAKRRRKEE KKTRKEEKKR RREERHRKRE
801: ERRGGKEKHK KQELSDTSEG EVEARPKIKK GEESDPKRLE IELRNKALES LKAKKGISH
Arabidopsis Description
At2g29210/F16P2.41 [Source:UniProtKB/TrEMBL;Acc:Q8L7W3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.