Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400013080 | |
| PGSC0003DMT400071935 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G29210.1 | PGSC0003DMT400071935 | AT2G29210.1 | 21798944 |
| AT2G29210.1 | PGSC0003DMT400013080 | AT4G33690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P03820_001 | Banana | cytosol | 7.48 | 80.49 |
| Solyc09g030390.2.1 | Tomato | nucleus | 82.54 | 79.04 |
| VIT_06s0004g05220.t01 | Wine grape | nucleus | 51.02 | 48.81 |
| KRH24737 | Soybean | nucleus | 42.4 | 42.02 |
| KRH29744 | Soybean | nucleus | 41.27 | 39.74 |
| Os03t0270200-01 | Rice | nucleus | 35.94 | 37.74 |
| CDY65665 | Canola | nucleus | 34.92 | 37.7 |
| CDY45430 | Canola | nucleus | 35.37 | 37.19 |
| Bra018407.1-P | Field mustard | nucleus | 35.15 | 36.73 |
| AT2G29210.1 | Thale cress | nucleus | 36.05 | 36.22 |
| KXG39705 | Sorghum | nucleus | 34.69 | 34.77 |
| Zm00001d028579_P027 | Maize | nucleus | 35.15 | 34.22 |
| GSMUA_Achr10P... | Banana | nucleus | 32.31 | 33.77 |
| TraesCS4B01G209700.1 | Wheat | nucleus | 31.41 | 33.54 |
| TraesCS4D01G210400.1 | Wheat | nucleus | 31.29 | 33.41 |
| TraesCS4A01G094800.1 | Wheat | nucleus | 31.18 | 33.37 |
| HORVU4Hr1G060270.6 | Barley | nucleus | 31.18 | 33.33 |
| Zm00001d047831_P001 | Maize | nucleus | 10.2 | 25.21 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400071935 | EnsemblPlantsGene:PGSC0003DMG400027986 | EntrezGene:102596503 | Gene3D:1.20.1390.10 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR002483 | InterPro:PWI_dom | InterPro:PWI_dom_sf |
| ncoils:Coil | PFAM:PF01480 | PFscan:PS51025 | PGSC:PGSC0003DMG400027986 | RefSeq:XP_006362050.1 | SEG:seg |
| SMART:SM00311 | SUPFAM:SSF101233 | UniParc:UPI000294B34E | UniProt:M1CPI4 | MapMan:17.3.1.2.2 | : |
Description
Copper ion binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027986]
Coordinates
chr9:+:33675394..33682604
Molecular Weight (calculated)
103057.0 Da
IEP (calculated)
11.537
GRAVY (calculated)
-1.517
Length
882 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGFFRGTS AEQDTRFSNK QAKLLKSQKF APELEHLVDM TKVKMDVMKP WIAKRVTELI GFEDEVLINF IYSLLERKVA NGKELQISLT GFMERNTGKF
101: MKELWALLLS AQNNASGVPQ QFLEAKEEEM RNKKAEMDRI ANEIQKKKER ENRELDQEKR KKMDDYDSNL RQKNASREPT PKQQLQVRLM DDLDPVERNG
201: SRVRNRVSKS PRSADHSLSP RKSRSISKSF SNSRSYSGER HRSRSTSGSL EERRCRSVSS ERAYRSAPKC SVSPRRKHSP RQSHSPPRHR RRSTSRVRRR
301: SPSPARYRRH SPFRRRSRSP LRRRSRSPLR HRSRSPIWRR SRSPIWCRSR SPSRRSPVRY ISRSPIKRRS PLRRRTPSPT QRRSPSPVSR GYHRSPLSPR
401: QSSPFLVQRK PSISGRKRSL TPARRFLSSQ ESLSPSPIYR RSPSPIRKRI SKNERSPVQS LRGRIRSREK YSSVRYASPV KTEAHKGSRS LERRRPTSSG
501: SPQKRIYDRK DSREKELPLP PQLSRSPSVP ESPRRSRSDS ESPPTKRGRS PSEDRGPRST LNRREIKTSD FDSLSPSKLR EQKVSSDISE KITDQKEMNH
601: SREAFEHKPR SSRKIPTTPD PYKDLGKGFV EKEFSDIHSR SDRLESRKRN EAIKSEKFSG TMEHTKELDK QKSPSTHRHS HSVKRLKESY DGESVKADKE
701: NLSHTNDTKG KELHVESEAP LTSSKKVEQN DLSSNEGSGF EESEKRRAKI KDKRKHKRSD RYESTSDDSS DSDVEDRKEA KKRRKEERRL KKEEKRRRRE
801: ERRRRKEERR SQKLKSKSAN AISSPSDTDR NPDNHASDDE HLRKEGQHGR EIEESESLQK RLEIELREKA LESLRAKKGV SH
101: MKELWALLLS AQNNASGVPQ QFLEAKEEEM RNKKAEMDRI ANEIQKKKER ENRELDQEKR KKMDDYDSNL RQKNASREPT PKQQLQVRLM DDLDPVERNG
201: SRVRNRVSKS PRSADHSLSP RKSRSISKSF SNSRSYSGER HRSRSTSGSL EERRCRSVSS ERAYRSAPKC SVSPRRKHSP RQSHSPPRHR RRSTSRVRRR
301: SPSPARYRRH SPFRRRSRSP LRRRSRSPLR HRSRSPIWRR SRSPIWCRSR SPSRRSPVRY ISRSPIKRRS PLRRRTPSPT QRRSPSPVSR GYHRSPLSPR
401: QSSPFLVQRK PSISGRKRSL TPARRFLSSQ ESLSPSPIYR RSPSPIRKRI SKNERSPVQS LRGRIRSREK YSSVRYASPV KTEAHKGSRS LERRRPTSSG
501: SPQKRIYDRK DSREKELPLP PQLSRSPSVP ESPRRSRSDS ESPPTKRGRS PSEDRGPRST LNRREIKTSD FDSLSPSKLR EQKVSSDISE KITDQKEMNH
601: SREAFEHKPR SSRKIPTTPD PYKDLGKGFV EKEFSDIHSR SDRLESRKRN EAIKSEKFSG TMEHTKELDK QKSPSTHRHS HSVKRLKESY DGESVKADKE
701: NLSHTNDTKG KELHVESEAP LTSSKKVEQN DLSSNEGSGF EESEKRRAKI KDKRKHKRSD RYESTSDDSS DSDVEDRKEA KKRRKEERRL KKEEKRRRRE
801: ERRRRKEERR SQKLKSKSAN AISSPSDTDR NPDNHASDDE HLRKEGQHGR EIEESESLQK RLEIELREKA LESLRAKKGV SH
001: MSGGFFRGTS AEQDTRFSNK QAKLMKSQKF APELENLVDI TKVKMDVMKP WIATRVTELL GIEDEVLINF IYGLLDGKVV NGKEIQITLT GFMEKNTGKF
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
501: ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
601: RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
701: RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
801: KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG EESDPKRLEI ELRNKALESL KAKKGISH
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
501: ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
601: RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
701: RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
801: KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG EESDPKRLEI ELRNKALESL KAKKGISH
Arabidopsis Description
At2g29210/F16P2.41 [Source:UniProtKB/TrEMBL;Acc:Q8L7W3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.