Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G094800.1 | Wheat | nucleus | 95.39 | 95.51 |
| TraesCS4B01G209700.1 | Wheat | nucleus | 95.52 | 95.4 |
| TraesCS4D01G210400.1 | Wheat | nucleus | 95.27 | 95.16 |
| GSMUA_Achr9P03820_001 | Banana | cytosol | 8.12 | 81.71 |
| Os03t0270200-01 | Rice | nucleus | 60.85 | 59.76 |
| KXG39705 | Sorghum | nucleus | 57.82 | 54.2 |
| Zm00001d028579_P027 | Maize | nucleus | 56.12 | 51.1 |
| Zm00001d047831_P001 | Maize | nucleus | 15.76 | 36.41 |
| GSMUA_Achr10P... | Banana | nucleus | 34.42 | 33.65 |
| KRH24737 | Soybean | nucleus | 35.88 | 33.26 |
| CDY45430 | Canola | nucleus | 33.58 | 33.02 |
| Bra018407.1-P | Field mustard | nucleus | 33.45 | 32.7 |
| CDY65665 | Canola | nucleus | 32.36 | 32.68 |
| VIT_06s0004g05220.t01 | Wine grape | nucleus | 36.24 | 32.43 |
| KRH29744 | Soybean | nucleus | 35.76 | 32.21 |
| AT2G29210.1 | Thale cress | nucleus | 33.45 | 31.44 |
| PGSC0003DMT400071935 | Potato | nucleus | 33.33 | 31.18 |
| Solyc09g030390.2.1 | Tomato | nucleus | 33.82 | 30.29 |
Protein Annotations
| Gene3D:1.20.1390.10 | MapMan:17.3.1.2.2 | UniProt:A0A287PA58 | ncoils:Coil | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:HORVU4Hr1G060270 | EnsemblPlants:HORVU4Hr1G060270.6 | InterPro:IPR002483 |
| PFAM:PF01480 | PFscan:PS51025 | InterPro:PWI_dom | InterPro:PWI_dom_sf | SMART:SM00311 | SUPFAM:SSF101233 |
| UniParc:UPI000B46404B | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:505325719..505334979
Molecular Weight (calculated)
94255.5 Da
IEP (calculated)
11.589
GRAVY (calculated)
-1.608
Length
825 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGGFFRGTS ADQDTRFSNK HAKLLKTQKF ASELDHQVDM SKVKMDVMKP WIATRVTELL GFEDEVLINF IYGLLDAKEV DGKYIQIQLT GFMEKNTIKF
101: MRELWSLLLS AQQNASGVPQ QFLDAKEAEI QQRKAEEARI AQEIQKKREK DGRDAELDKR KMMAGDTGNS RSHGDSLGSA LNNPNVDAEK EKELDLKHSS
201: RTKSREHRRP RSTSLSPRGR QRSISPRRRS PSPSRQRSSR RSASPRRSVS PRKHSPRIAP SMSRRRSPYS RRSPSVPRSP SPRRRFPIRR RSPPSGRRRS
301: PSPYRRRSPA RPPRRSPSPA RRRSPPRHRL PADRHRSPSP GRRRPRSPSP VRRRPRSPSP RRHRRSPGRR QSLSPHRSPQ LRSPKRQRKS PISIRTFSAN
401: RPVSPQRRRS SSPHSRSPNR SHRSPSRDSD KGTNGAPSTK GRDLAQRNQE RSSRESPDFE HRRLTKSLRS PTNDAERDST HGSPLKDTGK HMPSQDSINT
501: SGDEEEGGRA RENARKANSS RRISKDFSAD LQPKEVNVDN SIPAEKSSSK SRQDGGKDVP RKYDNQPSDS SEDALDGTRM KRQGDSPDDS RGKRQSPSRA
601: GDSYPKDGIN NERAKMDSHG ASYDAIAAKK YSGKVDEASQ SDGGSPLQKA KKRTYDSKHI DRHSSGSEES EKHRSQSEKR RHKKGHKHKK HYDDSSDSDS
701: DSDDKESKRR RREEKKLRKE ERRLRREERH RRRADRHASK QRLKYAGSPL SDLEKDRQSG SDADVGKKGS YTPREEPDPN KLEIELRQRA LESLAKKSKH
801: VVTPSSDVEK DHESDSDADV RKRVS
101: MRELWSLLLS AQQNASGVPQ QFLDAKEAEI QQRKAEEARI AQEIQKKREK DGRDAELDKR KMMAGDTGNS RSHGDSLGSA LNNPNVDAEK EKELDLKHSS
201: RTKSREHRRP RSTSLSPRGR QRSISPRRRS PSPSRQRSSR RSASPRRSVS PRKHSPRIAP SMSRRRSPYS RRSPSVPRSP SPRRRFPIRR RSPPSGRRRS
301: PSPYRRRSPA RPPRRSPSPA RRRSPPRHRL PADRHRSPSP GRRRPRSPSP VRRRPRSPSP RRHRRSPGRR QSLSPHRSPQ LRSPKRQRKS PISIRTFSAN
401: RPVSPQRRRS SSPHSRSPNR SHRSPSRDSD KGTNGAPSTK GRDLAQRNQE RSSRESPDFE HRRLTKSLRS PTNDAERDST HGSPLKDTGK HMPSQDSINT
501: SGDEEEGGRA RENARKANSS RRISKDFSAD LQPKEVNVDN SIPAEKSSSK SRQDGGKDVP RKYDNQPSDS SEDALDGTRM KRQGDSPDDS RGKRQSPSRA
601: GDSYPKDGIN NERAKMDSHG ASYDAIAAKK YSGKVDEASQ SDGGSPLQKA KKRTYDSKHI DRHSSGSEES EKHRSQSEKR RHKKGHKHKK HYDDSSDSDS
701: DSDDKESKRR RREEKKLRKE ERRLRREERH RRRADRHASK QRLKYAGSPL SDLEKDRQSG SDADVGKKGS YTPREEPDPN KLEIELRQRA LESLAKKSKH
801: VVTPSSDVEK DHESDSDADV RKRVS
001: MSGGFFRGTS AEQDTRFSNK QAKLMKSQKF APELENLVDI TKVKMDVMKP WIATRVTELL GIEDEVLINF IYGLLDGKVV NGKEIQITLT GFMEKNTGKF
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
501: ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
601: RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
701: RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
801: KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG EESDPKRLEI ELRNKALESL KAKKGISH
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
501: ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
601: RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
701: RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
801: KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG EESDPKRLEI ELRNKALESL KAKKGISH
Arabidopsis Description
At2g29210/F16P2.41 [Source:UniProtKB/TrEMBL;Acc:Q8L7W3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.