Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d019181_P001 | |
| Zm00001d021873_P001 | |
| Zm00001d028579_P027 | |
| Zm00001d047831_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d028579_P027 | Maize | nucleus | 53.78 | 21.19 |
| KXG39705 | Sorghum | nucleus | 51.26 | 20.8 |
| Os03t0270200-01 | Rice | nucleus | 38.94 | 16.55 |
| TraesCS4A01G094800.1 | Wheat | nucleus | 37.25 | 16.14 |
| TraesCS4B01G209700.1 | Wheat | nucleus | 37.25 | 16.1 |
| TraesCS4D01G210400.1 | Wheat | nucleus | 36.69 | 15.86 |
| HORVU4Hr1G060270.6 | Barley | nucleus | 36.41 | 15.76 |
| PGSC0003DMT400071935 | Potato | nucleus | 25.21 | 10.2 |
| Solyc09g030390.2.1 | Tomato | nucleus | 24.37 | 9.45 |
| GSMUA_Achr10P... | Banana | nucleus | 21.85 | 9.24 |
| AT2G29210.1 | Thale cress | nucleus | 22.69 | 9.23 |
| VIT_06s0004g05220.t01 | Wine grape | nucleus | 23.25 | 9.0 |
| CDY45430 | Canola | nucleus | 20.73 | 8.82 |
| Bra018407.1-P | Field mustard | nucleus | 20.73 | 8.77 |
| KRH24737 | Soybean | nucleus | 21.57 | 8.65 |
| CDY65665 | Canola | nucleus | 19.61 | 8.57 |
| KRH29744 | Soybean | nucleus | 21.57 | 8.41 |
| GSMUA_Achr9P03820_001 | Banana | cytosol | 0.56 | 2.44 |
Protein Annotations
| EnsemblPlants:Zm00001d047831_P001 | EnsemblPlants:Zm00001d047831_T001 | EnsemblPlantsGene:Zm00001d047831 | Gene3D:1.20.1390.10 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR002483 | InterPro:PWI_dom | InterPro:PWI_dom_sf |
| PANTHER:PTHR23148 | PFAM:PF01480 | PFscan:PS51025 | ProteinID:AQL07725.1 | SEG:seg | SUPFAM:SSF101233 |
| UniParc:UPI0008453AB1 | UniProt:A0A1D6PDT6 | MapMan:17.3.1.2.2 | : | : | : |
Description
splicing factor PWI domain-containing protein
Coordinates
chr9:+:142709045..142720186
Molecular Weight (calculated)
40103.2 Da
IEP (calculated)
8.905
GRAVY (calculated)
-1.250
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAYGNEEAD GKKIQIQLTG FMEKNTMKFM KELWSLLLSA QQNASGVPQQ FLDEKEAEIH KKKDGDAGNS RSYGDPVASA LNSTNFNIEE EKDNDFKRTS
101: RPKNSSCTKE ITIYNSKVSC STQILTRKEQ TTVPISRKPQ AMVSVSNKTS VPISKTAEEV TKLTEDLFCK STFIATGKED CRSPSRSCRS LSRDIEKETN
201: GTPFTKNRAV HSRVREQKTD DNDRDGARIG GHHSPDFEHR LSKSVRSPNN EERNSTLDSG KGVQKKHPDQ LSESSEDELA GRRTKRQTDS PDDHRGKHNS
301: PTRIENDDSY SKNGRNSEHV MRGLHDGSDD AKKYLSKVNE DSQSEDGSPS KKKLRKE
101: RPKNSSCTKE ITIYNSKVSC STQILTRKEQ TTVPISRKPQ AMVSVSNKTS VPISKTAEEV TKLTEDLFCK STFIATGKED CRSPSRSCRS LSRDIEKETN
201: GTPFTKNRAV HSRVREQKTD DNDRDGARIG GHHSPDFEHR LSKSVRSPNN EERNSTLDSG KGVQKKHPDQ LSESSEDELA GRRTKRQTDS PDDHRGKHNS
301: PTRIENDDSY SKNGRNSEHV MRGLHDGSDD AKKYLSKVNE DSQSEDGSPS KKKLRKE
001: MSGGFFRGTS AEQDTRFSNK QAKLMKSQKF APELENLVDI TKVKMDVMKP WIATRVTELL GIEDEVLINF IYGLLDGKVV NGKEIQITLT GFMEKNTGKF
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
501: ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
601: RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
701: RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
801: KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG EESDPKRLEI ELRNKALESL KAKKGISH
101: MKELWTLLLS AQNNPSGVPQ QFLDARAAET KKKQEEANEI MKKREGDKKN IEHDILRKID SGVEHKETNG MDAKPSRDRP EDGRRADEKN GVKERRRDLI
201: PPRRGDASRS PLRGSRSRSI SKTNSGSKSY SGERKSRSTS QSSDASISPR KRRLSNSRRR SRSRSVRRSL SPRRRRIHSP FRSRSRSPIR RHRRPTHEGR
301: RQSPAPSRRR RSPSPPARRR RSPSPPARRR RSPSPPARRH RSPTPPARQR RSPSPPARRH RSPPPARRRR SPSPPARRRR SPSPPARRRR SPSPLYRRNR
401: SPSPLYRRNR SRSPLAKRGR SDSPGRSPSP VARLRDPTGA RLPSPSIEQR LPSPPVAQRL PSPPPRRAGL PSPPPAQRLP SPPPRRAGLP SPMRIGGSHA
501: ANHLESPSPS SLSPPGRKKV LPSPPVRRRR SLTPDEERVS LSQGGRHTSP SHIKQDGSMS PVRGRGKSSP SSRHQKARSP VRRRSPTPVN RRSRRSSSAS
601: RSPDRRRRRS PSSSRSPSRS RSPPVLHRSP SPRGRKHQRE RRSPGRLSEE QDRVQNSKLL KRTSVPDTDK RKQLPEKLLE VGRVEHYKEQ ERKSDKLSEK
701: RSVHRHHGSQ MSPVENSEGR SRPVSSKVKD SEQVEKEDNS DLDANLSCDS KDTIRHQIKD KNRRKNKRSS REEVSSDDNG SSDSDVDDRK EAKRRRKEEK
801: KTRKEEKKRR REERHRKREE RRGGKEKHKK QELSDTSEGE VEARPKIKKG EESDPKRLEI ELRNKALESL KAKKGISH
Arabidopsis Description
At2g29210/F16P2.41 [Source:UniProtKB/TrEMBL;Acc:Q8L7W3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.