Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER96069 | Sorghum | nucleus | 84.82 | 85.49 |
| Zm00001d021873_P001 | Maize | nucleus | 79.77 | 79.46 |
| TraesCS7A01G111400.1 | Wheat | nucleus | 70.82 | 71.37 |
| TraesCS7B01G009300.1 | Wheat | nucleus | 70.82 | 70.27 |
| TraesCS7D01G106500.1 | Wheat | nucleus | 68.48 | 69.02 |
| Os07t0213400-01 | Rice | nucleus, plastid | 70.43 | 68.05 |
| Os08t0192200-01 | Rice | nucleus | 22.57 | 61.05 |
| HORVU7Hr1G023920.2 | Barley | cytosol, nucleus | 44.75 | 57.5 |
| KRH50572 | Soybean | cytosol | 23.35 | 57.14 |
| TraesCS5D01G216700.1 | Wheat | nucleus | 70.43 | 54.19 |
| TraesCS5A01G215300.3 | Wheat | nucleus | 66.93 | 51.81 |
| Bra001231.1-P | Field mustard | nucleus | 41.25 | 49.53 |
| HORVU7Hr1G023800.2 | Barley | cytosol | 28.4 | 47.1 |
| CDX74067 | Canola | nucleus | 40.86 | 47.09 |
| HORVU7Hr1G023790.1 | Barley | cytosol, mitochondrion, nucleus | 14.4 | 45.12 |
| HORVU7Hr1G023780.5 | Barley | cytosol | 21.01 | 45.0 |
| PGSC0003DMT400013080 | Potato | nucleus | 42.8 | 42.64 |
| CDX68998 | Canola | nucleus | 39.69 | 41.13 |
| CDY43847 | Canola | nucleus | 30.35 | 40.62 |
| CDX75374 | Canola | nucleus | 39.69 | 40.16 |
| Bra011462.1-P | Field mustard | nucleus | 39.3 | 39.76 |
| KRH10674 | Soybean | nucleus | 45.91 | 39.33 |
| CDY08019 | Canola | mitochondrion, nucleus | 43.19 | 38.28 |
| AT4G33690.1 | Thale cress | nucleus | 36.58 | 38.21 |
| KRH21674 | Soybean | nucleus | 41.63 | 36.27 |
| Solyc01g106560.2.1 | Tomato | nucleus | 42.41 | 35.5 |
| Bra023945.1-P | Field mustard | cytosol | 38.52 | 35.48 |
| CDY48230 | Canola | cytosol, extracellular, plastid | 14.4 | 33.33 |
| GSMUA_Achr6P16520_001 | Banana | nucleus | 31.91 | 32.93 |
| CDY26345 | Canola | cytosol, nucleus, plastid | 37.74 | 32.33 |
| CDY71888 | Canola | extracellular, golgi | 35.02 | 29.32 |
| VIT_03s0088g01000.t01 | Wine grape | nucleus | 47.86 | 29.29 |
| CDX74406 | Canola | endoplasmic reticulum | 23.35 | 25.64 |
| CDY16047 | Canola | golgi, plasma membrane | 29.96 | 25.58 |
| CDY48061 | Canola | plastid | 33.46 | 25.22 |
| CDY22755 | Canola | extracellular | 11.67 | 24.59 |
| CDY48229 | Canola | cytosol, mitochondrion | 14.01 | 23.68 |
Protein Annotations
| EMBL:BT040500 | EMBL:BT063926 | EnsemblPlants:Zm00001d019181_P001 | EnsemblPlants:Zm00001d019181_T001 | EnsemblPlantsGene:Zm00001d019181 | EntrezGene:100277511 |
| ncoils:Coil | PANTHER:PTHR34684 | ProteinID:ONM52423.1 | SEG:seg | UniParc:UPI00017B7ACD | UniProt:B4FTR2 |
| MapMan:35.2 | : | : | : | : | : |
Description
AT4g33690/T16L1_180
Coordinates
chr7:+:20575192..20579125
Molecular Weight (calculated)
30039.0 Da
IEP (calculated)
10.526
GRAVY (calculated)
-1.543
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLETENRLA SLLLEEARRL QLEANREGVQ AYLRKPNVRH RPNSRFLTAT VRGVQQANRV VEVNEMWRAR EKELELESKM KGRSSRSKDH GDFTGEKRKS
101: ERNHSSSSRI EQEGTTYDTS YSDQEDGLRD DEIERFLYSR AKRGRGAVGS RMDEPGPYLD SLSHHQDNGP SPDIRVEEKW ERRVQGPEKP PFWGCKSLDG
201: HWRLGTLDGR PSSSEPQSKK EKKSKLDKKD KIEKRKEKGK KKSKHRHHRH RRSSRSE
101: ERNHSSSSRI EQEGTTYDTS YSDQEDGLRD DEIERFLYSR AKRGRGAVGS RMDEPGPYLD SLSHHQDNGP SPDIRVEEKW ERRVQGPEKP PFWGCKSLDG
201: HWRLGTLDGR PSSSEPQSKK EKKSKLDKKD KIEKRKEKGK KKSKHRHHRH RRSSRSE
001: MDLETENRIA SILLREAAEL RRQAEKDGVR AYLEKPNVRH RPNSRFLTAT VLGVQQANKA VETNEMWSLR SKEIEFGERL KRKSRDESSN GQSEQNNRRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD
Arabidopsis Description
At4g33690 [Source:UniProtKB/TrEMBL;Acc:Q6NPE9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.