CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74067	Canola	nucleus	71.03	92.38
Bra001231.1-P	Field mustard	nucleus	65.52	88.78
CDY43847	Canola	nucleus	43.79	66.15
CDY48230	Canola	cytosol, extracellular, plastid	19.31	50.45
CDX68998	Canola	nucleus	41.03	47.98
CDY26345	Canola	cytosol, nucleus, plastid	47.59	46.0
CDX75374	Canola	nucleus	38.97	44.49
TraesCS7A01G111400.1	Wheat	nucleus	38.62	43.92
EER97413	Sorghum	nucleus	38.28	43.53
Zm00001d019181_P001	Maize	nucleus	38.28	43.19
Zm00001d021873_P001	Maize	nucleus	37.93	42.64
PGSC0003DMT400013080	Potato	nucleus	37.93	42.64
TraesCS7A01G405900.1	Wheat	nucleus	36.9	42.63
TraesCS7B01G009300.1	Wheat	nucleus	37.93	42.47
TraesCS7D01G106500.1	Wheat	nucleus	37.24	42.35
TraesCS7B01G305800.3	Wheat	nucleus	36.21	42.17
CDY71888	Canola	extracellular, golgi	44.48	42.02
EER96069	Sorghum	nucleus	36.9	41.96
Os07t0213400-01	Rice	nucleus, plastid	37.93	41.35
CDY48061	Canola	plastid	44.83	38.12
Os08t0192200-01	Rice	nucleus	12.41	37.89
HORVU7Hr1G094990.2	Barley	nucleus	36.21	37.63
KRH10674	Soybean	nucleus	38.28	37.0
CDX74406	Canola	endoplasmic reticulum	29.66	36.75
KRH21674	Soybean	nucleus	36.9	36.27
HORVU7Hr1G023800.2	Barley	cytosol	19.31	36.13
Solyc01g106560.2.1	Tomato	nucleus	37.93	35.83
HORVU7Hr1G023920.2	Barley	cytosol, nucleus	22.76	33.0
TraesCS5D01G216700.1	Wheat	nucleus	37.93	32.93
TraesCS5A01G215300.3	Wheat	nucleus	37.59	32.83
CDY16047	Canola	golgi, plasma membrane	33.1	31.89
HORVU7Hr1G023780.5	Barley	cytosol	12.07	29.17
VIT_03s0088g01000.t01	Wine grape	nucleus	41.72	28.81
CDY48229	Canola	cytosol, mitochondrion	13.45	25.66
CDY22755	Canola	extracellular	10.69	25.41
GSMUA_Achr6P16520_001	Banana	nucleus	17.93	20.88
HORVU7Hr1G023790.1	Barley	cytosol, mitochondrion, nucleus	5.52	19.51

Protein Annotations

EnsemblPlants:CDY08019	EnsemblPlantsGene:GSBRNA2T00125264001	ncoils:Coil	PANTHER:PTHR34684	ProteinID:CDY08019	ProteinID:CDY08019.1
SEG:seg	UniParc:UPI0004EEFA0D	UniProt:A0A078F4T3	MapMan:35.2	:	:

Description

BnaC03g35040DBnaC03g35040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4T3]

Coordinates

chrLK031982:-:654217..655808

Molecular Weight (calculated)

34274.5 Da

IEP (calculated)

10.635

GRAVY (calculated)

-1.256

Length

290 amino acids

Sequence
(BLAST)

001: MLREPLQKRV SFFRIRIRFS WDIVSSLLLL AQEERREIEA YKVFDFTDHS FRFRLLYQFP RMDLETENRI ASVLLREAAE LRRQAERDGV RAYLEKPNVR
101: HRPNSRFLTA TVLGVQQSNR AVETNEMWKA REKEIELENE RRKRKSREES SSSSSSSRMK RSSSFSKRSL DKRCSSSNDE KKFTHPLDDE DEGLGDDEIE
201: SFLQSRNKRG RGSIGPRMDE TGPYLPAEKV DELQSSDTRE RKVVLGPERP PSLRQHSDDK EPGRRIKKDS TKKLSKKDKK TEKKRKRDKH

Best Arabidopsis Sequence Match ( AT4G33690.1 )
(BLAST)

001: MDLETENRIA SILLREAAEL RRQAEKDGVR AYLEKPNVRH RPNSRFLTAT VLGVQQANKA VETNEMWSLR SKEIEFGERL KRKSRDESSN GQSEQNNRRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD

Arabidopsis Description

At4g33690 [Source:UniProtKB/TrEMBL;Acc:Q6NPE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.