Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023945.1-P | Field mustard | cytosol | 82.0 | 88.17 |
| CDY43847 | Canola | nucleus | 40.67 | 63.54 |
| CDX74067 | Canola | nucleus | 44.67 | 60.09 |
| CDY08019 | Canola | mitochondrion, nucleus | 46.0 | 47.59 |
| CDY48230 | Canola | cytosol, extracellular, plastid | 17.0 | 45.95 |
| CDY71888 | Canola | extracellular, golgi | 45.67 | 44.63 |
| CDX68998 | Canola | nucleus | 33.33 | 40.32 |
| CDX75374 | Canola | nucleus | 33.67 | 39.76 |
| CDX74406 | Canola | endoplasmic reticulum | 30.33 | 38.89 |
| TraesCS7A01G405900.1 | Wheat | nucleus | 32.0 | 38.25 |
| TraesCS7B01G305800.3 | Wheat | nucleus | 31.33 | 37.75 |
| Zm00001d019181_P001 | Maize | nucleus | 32.33 | 37.74 |
| CDY48061 | Canola | plastid | 42.67 | 37.54 |
| TraesCS7A01G111400.1 | Wheat | nucleus | 31.0 | 36.47 |
| PGSC0003DMT400013080 | Potato | nucleus | 31.33 | 36.43 |
| TraesCS7B01G009300.1 | Wheat | nucleus | 31.33 | 36.29 |
| EER97413 | Sorghum | nucleus | 30.67 | 36.08 |
| Os07t0213400-01 | Rice | nucleus, plastid | 31.67 | 35.71 |
| TraesCS7D01G106500.1 | Wheat | nucleus | 30.33 | 35.69 |
| EER96069 | Sorghum | nucleus | 29.67 | 34.9 |
| HORVU7Hr1G023800.2 | Barley | cytosol | 18.0 | 34.84 |
| Os08t0192200-01 | Rice | nucleus | 11.0 | 34.74 |
| Zm00001d021873_P001 | Maize | nucleus | 29.67 | 34.5 |
| HORVU7Hr1G094990.2 | Barley | nucleus | 30.33 | 32.62 |
| KRH10674 | Soybean | nucleus | 31.33 | 31.33 |
| CDY22755 | Canola | extracellular | 12.67 | 31.15 |
| KRH21674 | Soybean | nucleus | 30.33 | 30.85 |
| Solyc01g106560.2.1 | Tomato | nucleus | 31.0 | 30.29 |
| CDY48229 | Canola | cytosol, mitochondrion | 15.33 | 30.26 |
| CDY16047 | Canola | golgi, plasma membrane | 29.67 | 29.57 |
| TraesCS5D01G216700.1 | Wheat | nucleus | 32.67 | 29.34 |
| TraesCS5A01G215300.3 | Wheat | nucleus | 32.0 | 28.92 |
| HORVU7Hr1G023920.2 | Barley | cytosol, nucleus | 17.67 | 26.5 |
| HORVU7Hr1G023780.5 | Barley | cytosol | 10.0 | 25.0 |
| VIT_03s0088g01000.t01 | Wine grape | nucleus | 32.0 | 22.86 |
| GSMUA_Achr6P16520_001 | Banana | nucleus | 15.33 | 18.47 |
| HORVU7Hr1G023790.1 | Barley | cytosol, mitochondrion, nucleus | 3.33 | 12.2 |
Protein Annotations
| EnsemblPlants:CDY26345 | EnsemblPlantsGene:GSBRNA2T00035085001 | GO:A0A078GIN4 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ncoils:Coil | ProteinID:CDY26345 | ProteinID:CDY26345.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EF2A84 |
| UniProt:A0A078GIN4 | MapMan:35.1 | : | : | : | : |
Description
BnaA03g60210DBnaA03g60210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIN4]
Coordinates
chrLK032188:+:372795..375122
Molecular Weight (calculated)
34009.1 Da
IEP (calculated)
7.911
GRAVY (calculated)
-0.586
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLETENRIA SVLLREAAEL RRQAEKDGVR AYLEKPNVRH RPNSRFLTTT VLGVKQSNSA VETNEMGKAR ELENERLKRK SREESSSSSS QMKRSSSFSK
101: RSLDRKITHQ SSLDKRLYLD DDDEGLGDDE IESFLQSRYI CLFAIASVTF SFLHLLSLFV NDRNKRGRGS VGPRMDETGP YLPTEKVDQL QNWYSAYVSS
201: RVTGSPNRPH VVFIDGHCTT QLEETWTGLF SGIRYAKNFT KPVCFLHTIL SPLGYETALF NGLSGEIDCN GESAHSLWLD PDNTKTARLS EVVSLLKCLR
101: RSLDRKITHQ SSLDKRLYLD DDDEGLGDDE IESFLQSRYI CLFAIASVTF SFLHLLSLFV NDRNKRGRGS VGPRMDETGP YLPTEKVDQL QNWYSAYVSS
201: RVTGSPNRPH VVFIDGHCTT QLEETWTGLF SGIRYAKNFT KPVCFLHTIL SPLGYETALF NGLSGEIDCN GESAHSLWLD PDNTKTARLS EVVSLLKCLR
001: MSKRNPKILK IFLYMLLLNS LFLIIYFVFH SSSFSPEQSQ PPHIYHVSVN NQSAIQKPWP ILPSYLPWTP PQRNLPTGSC EGYFGNGFTK RVDFLKPRIG
101: GGGEGSWFRC FYSETLQSSI CEGRNLRMVP DRIVMSRGGE KLEEVMGRKE EEELPAFRQG AFEVAEEVSS RLGFKRHRRF GGGEGGSAVS RRLVNDEMLN
201: EYMQEGGIDR HTMRDLVASI RAVDTNDFVC EEWVEEPTLL VTRFEYANLF HTVTDWYSAY VSSRVTGLPN RPHVVFVDGH CTTQLEETWT ALFSGIRYAK
301: NFTKPVCFRH AILSPLGYET ALFKGLSGEI DCKGDSAHNL WQNPDDKRTA RISEFGEMIR AAFGLPVNRH RSLEKPLSSS SSSASVYNVL FVRREDYLAH
401: PRHGGKVQSR LINEEEVFDS LHHWVATGST GLTKCGINLV NGLLAHMSMK DQVRAIQDAS VIIGAHGAGL THIVSATPNT TIFEIISVEF QRPHFELIAK
501: WKGLEYHAMH LANSRAEPTA VIEKLTEIMK SLGC
101: GGGEGSWFRC FYSETLQSSI CEGRNLRMVP DRIVMSRGGE KLEEVMGRKE EEELPAFRQG AFEVAEEVSS RLGFKRHRRF GGGEGGSAVS RRLVNDEMLN
201: EYMQEGGIDR HTMRDLVASI RAVDTNDFVC EEWVEEPTLL VTRFEYANLF HTVTDWYSAY VSSRVTGLPN RPHVVFVDGH CTTQLEETWT ALFSGIRYAK
301: NFTKPVCFRH AILSPLGYET ALFKGLSGEI DCKGDSAHNL WQNPDDKRTA RISEFGEMIR AAFGLPVNRH RSLEKPLSSS SSSASVYNVL FVRREDYLAH
401: PRHGGKVQSR LINEEEVFDS LHHWVATGST GLTKCGINLV NGLLAHMSMK DQVRAIQDAS VIIGAHGAGL THIVSATPNT TIFEIISVEF QRPHFELIAK
501: WKGLEYHAMH LANSRAEPTA VIEKLTEIMK SLGC
Arabidopsis Description
XYLTGlycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8PUA9]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.