Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G023920.2 | Barley | cytosol, nucleus | 32.53 | 40.5 |
| Os08t0192200-01 | Rice | nucleus | 13.65 | 35.79 |
| EER97413 | Sorghum | nucleus | 34.14 | 33.33 |
| EER96069 | Sorghum | nucleus | 33.73 | 32.94 |
| TraesCS7A01G111400.1 | Wheat | nucleus | 33.33 | 32.55 |
| Zm00001d019181_P001 | Maize | nucleus | 32.93 | 31.91 |
| TraesCS7D01G106500.1 | Wheat | nucleus | 32.53 | 31.76 |
| TraesCS7B01G009300.1 | Wheat | nucleus | 32.93 | 31.66 |
| Zm00001d021873_P001 | Maize | nucleus | 32.13 | 31.01 |
| Os07t0213400-01 | Rice | nucleus, plastid | 30.92 | 28.95 |
| HORVU7Hr1G023780.5 | Barley | cytosol | 13.65 | 28.33 |
| TraesCS7A01G405900.1 | Wheat | nucleus | 28.51 | 28.29 |
| HORVU7Hr1G023790.1 | Barley | cytosol, mitochondrion, nucleus | 9.24 | 28.05 |
| TraesCS7B01G305800.3 | Wheat | nucleus | 27.71 | 27.71 |
| PGSC0003DMT400013080 | Potato | nucleus | 26.91 | 25.97 |
| TraesCS5A01G215300.3 | Wheat | nucleus | 33.33 | 25.0 |
| TraesCS5D01G216700.1 | Wheat | nucleus | 33.33 | 24.85 |
| Bra001231.1-P | Field mustard | nucleus | 21.29 | 24.77 |
| HORVU7Hr1G094990.2 | Barley | nucleus | 27.31 | 24.37 |
| KRH10674 | Soybean | nucleus | 26.91 | 22.33 |
| Solyc01g106560.2.1 | Tomato | nucleus | 27.31 | 22.15 |
| KRH21674 | Soybean | nucleus | 26.1 | 22.03 |
| CDX74067 | Canola | nucleus | 19.68 | 21.97 |
| AT4G33690.1 | Thale cress | nucleus | 19.68 | 19.92 |
| CDY43847 | Canola | nucleus | 15.26 | 19.79 |
| VIT_03s0088g01000.t01 | Wine grape | nucleus | 32.53 | 19.29 |
| CDY48229 | Canola | cytosol, mitochondrion | 11.65 | 19.08 |
| CDX68998 | Canola | nucleus | 18.07 | 18.15 |
| Bra011462.1-P | Field mustard | nucleus | 18.47 | 18.11 |
| CDY22755 | Canola | extracellular | 8.84 | 18.03 |
| CDY08019 | Canola | mitochondrion, nucleus | 20.88 | 17.93 |
| CDX74406 | Canola | endoplasmic reticulum | 16.47 | 17.52 |
| CDX75374 | Canola | nucleus | 17.67 | 17.32 |
| Bra023945.1-P | Field mustard | cytosol | 19.28 | 17.2 |
| CDY26345 | Canola | cytosol, nucleus, plastid | 18.47 | 15.33 |
| KRH50572 | Soybean | cytosol | 5.62 | 13.33 |
| CDY71888 | Canola | extracellular, golgi | 16.06 | 13.03 |
| CDY16047 | Canola | golgi, plasma membrane | 13.65 | 11.3 |
| CDY48061 | Canola | plastid | 13.65 | 9.97 |
| HORVU7Hr1G023800.2 | Barley | cytosol | 6.02 | 9.68 |
| CDY48230 | Canola | cytosol, extracellular, plastid | 1.61 | 3.6 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P16520_001 | EnsemblPlants:GSMUA_Achr6T16520_001 | EnsemblPlantsGene:GSMUA_Achr6G16520_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | PANTHER:PTHR34684 | SEG:seg | UniParc:UPI000294E0B6 |
| UniProt:M0T7K0 | MapMan:35.2 | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G16520_001]
Coordinates
chr6:+:11004357..11011042
Molecular Weight (calculated)
28915.8 Da
IEP (calculated)
9.822
GRAVY (calculated)
-1.402
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEARRLRLE AEKEGVHVYL HQRNVRGRPN SRFLTATVLG VQQANRTVEV TEMWRAREKE LELEAKLEDR SNKHRHKSRG EKHHTNSPHM GSSSRKKKEN
101: MKTTISCLTS KQDLEDCCSY EDDGLRDEDV EEFLHSRAKR GRGAVGSRMD EAGPYLSQTC SDQDGHSPSH DVRVKEEWEN RILGPEKPSF LKLDSALCDD
201: SDTETRVCHT SSSRKCHSKK RRSREEKLGK RKRTEQRSKH HSKSRRAKD
101: MKTTISCLTS KQDLEDCCSY EDDGLRDEDV EEFLHSRAKR GRGAVGSRMD EAGPYLSQTC SDQDGHSPSH DVRVKEEWEN RILGPEKPSF LKLDSALCDD
201: SDTETRVCHT SSSRKCHSKK RRSREEKLGK RKRTEQRSKH HSKSRRAKD
001: MDLETENRIA SILLREAAEL RRQAEKDGVR AYLEKPNVRH RPNSRFLTAT VLGVQQANKA VETNEMWSLR SKEIEFGERL KRKSRDESSN GQSEQNNRRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD
Arabidopsis Description
At4g33690 [Source:UniProtKB/TrEMBL;Acc:Q6NPE9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.