Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g106560.2.1 | Tomato | nucleus | 94.96 | 79.8 |
| Bra001231.1-P | Field mustard | nucleus | 39.15 | 47.2 |
| CDX74067 | Canola | nucleus | 40.31 | 46.64 |
| Zm00001d019181_P001 | Maize | nucleus | 42.64 | 42.8 |
| EER97413 | Sorghum | nucleus | 41.86 | 42.35 |
| AT4G33690.1 | Thale cress | nucleus | 40.31 | 42.28 |
| TraesCS7A01G111400.1 | Wheat | nucleus | 41.09 | 41.57 |
| TraesCS7D01G106500.1 | Wheat | nucleus | 40.7 | 41.18 |
| EER96069 | Sorghum | nucleus | 40.7 | 41.18 |
| CDY43847 | Canola | nucleus | 30.62 | 41.15 |
| CDX68998 | Canola | nucleus | 39.53 | 41.13 |
| Zm00001d021873_P001 | Maize | nucleus | 41.09 | 41.09 |
| TraesCS7A01G405900.1 | Wheat | nucleus | 39.92 | 41.04 |
| TraesCS7B01G009300.1 | Wheat | nucleus | 40.7 | 40.54 |
| KRH21674 | Soybean | nucleus | 46.12 | 40.34 |
| TraesCS7B01G305800.3 | Wheat | nucleus | 38.76 | 40.16 |
| CDX75374 | Canola | nucleus | 39.15 | 39.76 |
| Os07t0213400-01 | Rice | nucleus, plastid | 40.7 | 39.47 |
| Bra011462.1-P | Field mustard | nucleus | 38.76 | 39.37 |
| KRH10674 | Soybean | nucleus | 45.35 | 39.0 |
| CDY08019 | Canola | mitochondrion, nucleus | 42.64 | 37.93 |
| HORVU7Hr1G094990.2 | Barley | nucleus | 39.15 | 36.2 |
| Bra023945.1-P | Field mustard | cytosol | 38.37 | 35.48 |
| HORVU7Hr1G023800.2 | Barley | cytosol | 20.93 | 34.84 |
| Os08t0192200-01 | Rice | nucleus | 12.79 | 34.74 |
| CDY48230 | Canola | cytosol, extracellular, plastid | 14.73 | 34.23 |
| HORVU7Hr1G023920.2 | Barley | cytosol, nucleus | 25.97 | 33.5 |
| TraesCS5A01G215300.3 | Wheat | nucleus | 41.47 | 32.23 |
| VIT_03s0088g01000.t01 | Wine grape | nucleus | 51.94 | 31.9 |
| TraesCS5D01G216700.1 | Wheat | nucleus | 40.7 | 31.44 |
| CDY26345 | Canola | cytosol, nucleus, plastid | 36.43 | 31.33 |
| CDY71888 | Canola | extracellular, golgi | 32.56 | 27.36 |
| GSMUA_Achr6P16520_001 | Banana | nucleus | 25.97 | 26.91 |
| HORVU7Hr1G023780.5 | Barley | cytosol | 11.63 | 25.0 |
| CDX74406 | Canola | endoplasmic reticulum | 21.32 | 23.5 |
| CDY48061 | Canola | plastid | 31.01 | 23.46 |
| CDY16047 | Canola | golgi, plasma membrane | 26.36 | 22.59 |
| CDY22755 | Canola | extracellular | 10.47 | 22.13 |
| HORVU7Hr1G023790.1 | Barley | cytosol, mitochondrion, nucleus | 6.59 | 20.73 |
| CDY48229 | Canola | cytosol, mitochondrion | 12.02 | 20.39 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400013080 | EnsemblPlantsGene:PGSC0003DMG400005104 | EntrezGene:102587269 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | PANTHER:PTHR34684 | PGSC:PGSC0003DMG400005104 | RefSeq:XP_006367084.1 |
| RefSeq:XP_006367085.1 | SEG:seg | UniParc:UPI0002960F8B | UniProt:M1A294 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400005104]
Coordinates
chr1:+:83152607..83155571
Molecular Weight (calculated)
29521.6 Da
IEP (calculated)
10.697
GRAVY (calculated)
-1.377
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLETENRIA TILLKEAAEL RRQAQSEGAL SYLHRPNVRG RPNSRFLTAT VLGVQQANRA VEVNEMWKLR QKEVKLENRI EGRSADNNSD TKCHSFSVSE
101: RRSHERYDTD SGTRGSKKRK IQDSHSSEDE GLRDAEIEAF LHSRVKRGRG TVGSRMDEAG PYLPSSPDPR EKESASPDMK LSKGSGYHVV VGPEKPVWLN
201: SPGSSENESL SDDKRKAPKK AKSSKHHDHC RKHRSKKKSK DKEHKSRRRE EKRLKRHR
101: RRSHERYDTD SGTRGSKKRK IQDSHSSEDE GLRDAEIEAF LHSRVKRGRG TVGSRMDEAG PYLPSSPDPR EKESASPDMK LSKGSGYHVV VGPEKPVWLN
201: SPGSSENESL SDDKRKAPKK AKSSKHHDHC RKHRSKKKSK DKEHKSRRRE EKRLKRHR
001: MDLETENRIA SILLREAAEL RRQAEKDGVR AYLEKPNVRH RPNSRFLTAT VLGVQQANKA VETNEMWSLR SKEIEFGERL KRKSRDESSN GQSEQNNRRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD
Arabidopsis Description
At4g33690 [Source:UniProtKB/TrEMBL;Acc:Q6NPE9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.