Factsheet for VIT_03s0088g01000.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0174g00320.t01
VIT_00s0194g00260.t01
VIT_01s0011g04080.t01
VIT_03s0088g01000.t01
VIT_05s0077g00530.t01
VIT_06s0004g05220.t01
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01
VIT_07s0151g00910.t01
VIT_16s0013g00610.t01
VIT_17s0000g03210.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33690.1	VIT_16s0013g00610.t01	AT1G02140.1	21798944
AT4G33690.1	VIT_01s0011g04080.t01	AT1G17970.1	21798944
AT4G33690.1	VIT_17s0000g03210.t01	AT1G17970.1	21798944
AT4G33690.1	VIT_06s0004g05220.t01	AT2G29210.1	21798944
AT4G33690.1	VIT_07s0031g02330.t01	AT3G48150.1	21798944
AT4G33690.1	VIT_07s0130g00490.t01	AT3G48150.1	21798944
AT4G33690.1	VIT_07s0151g00910.t01	AT4G02720.1	21798944
AT4G33690.1	VIT_05s0077g00530.t01	AT4G13540.1	21798944
AT4G33690.1	VIT_00s0194g00260.t01	AT4G17220.1	21798944
AT4G33690.1	VIT_03s0088g01000.t01	AT4G33690.1	21798944
AT4G33690.1	VIT_00s0174g00320.t01	AT5G12230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013080	Potato	nucleus	31.9	51.94
CDX74067	Canola	nucleus	27.38	51.57
Bra001231.1-P	Field mustard	nucleus	26.19	51.4
EER97413	Sorghum	nucleus	29.29	48.24
Zm00001d019181_P001	Maize	nucleus	29.29	47.86
EER96069	Sorghum	nucleus	28.81	47.45
Zm00001d021873_P001	Maize	nucleus	29.05	47.29
TraesCS7A01G405900.1	Wheat	nucleus	27.86	46.61
TraesCS7D01G106500.1	Wheat	nucleus	28.1	46.27
TraesCS7A01G111400.1	Wheat	nucleus	27.62	45.49
Os07t0213400-01	Rice	nucleus, plastid	28.81	45.49
TraesCS7B01G009300.1	Wheat	nucleus	27.62	44.79
AT4G33690.1	Thale cress	nucleus	26.19	44.72
KRH10674	Soybean	nucleus	31.9	44.67
KRH21674	Soybean	nucleus	31.19	44.41
Solyc01g106560.2.1	Tomato	nucleus	32.38	44.3
TraesCS7B01G305800.3	Wheat	nucleus	25.71	43.37
CDY43847	Canola	nucleus	19.76	43.23
CDX75374	Canola	nucleus	25.71	42.52
CDX68998	Canola	nucleus	25.0	42.34
Bra011462.1-P	Field mustard	nucleus	25.48	42.13
CDY08019	Canola	mitochondrion, nucleus	28.81	41.72
HORVU7Hr1G094990.2	Barley	nucleus	27.14	40.86
HORVU7Hr1G023920.2	Barley	cytosol, nucleus	18.81	39.5
Os08t0192200-01	Rice	nucleus	8.57	37.89
HORVU7Hr1G023800.2	Barley	cytosol	13.81	37.42
CDY48230	Canola	cytosol, extracellular, plastid	9.76	36.94
TraesCS5A01G215300.3	Wheat	nucleus	28.57	36.14
Bra023945.1-P	Field mustard	cytosol	23.57	35.48
TraesCS5D01G216700.1	Wheat	nucleus	27.62	34.73
GSMUA_Achr6P16520_001	Banana	nucleus	19.29	32.53
CDY26345	Canola	cytosol, nucleus, plastid	22.86	32.0
HORVU7Hr1G023780.5	Barley	cytosol	8.57	30.0
HORVU7Hr1G023790.1	Barley	cytosol, mitochondrion, nucleus	5.71	29.27
CDY71888	Canola	extracellular, golgi	20.48	28.01
CDY48061	Canola	plastid	20.95	25.81
CDY22755	Canola	extracellular	7.14	24.59
CDY16047	Canola	golgi, plasma membrane	16.9	23.59
CDX74406	Canola	endoplasmic reticulum	12.38	22.22
CDY48229	Canola	cytosol, mitochondrion	6.67	18.42

Protein Annotations

EntrezGene:100266970	wikigene:100266970	MapMan:35.2	EMBL:AM454937	ProteinID:CAN61243	ProteinID:CAN61243.1
ProteinID:CBI25085	ProteinID:CBI25085.3	ncoils:Coil	UniProt:D7T3K4	EMBL:FN595512	EntrezGene:LOC100266970
wikigene:LOC100266970	PANTHER:PTHR34684	TIGR:TC57880	TIGR:TC62799	UniParc:UPI0001BE2513	ArrayExpress:VIT_03s0088g01000
EnsemblPlantsGene:VIT_03s0088g01000	EnsemblPlants:VIT_03s0088g01000.t01	unigene:Vvi.4831	RefSeq:XP_002272862	RefSeq:XP_002272862.1	SEG:seg

Description

No Description!

Coordinates

chr3:-:9223670..9231652

Molecular Weight (calculated)

49286.1 Da

IEP (calculated)

10.319

GRAVY (calculated)

-1.171

Length

420 amino acids

Sequence
(BLAST)

001: MEIAKLRISE CSWVSTREQK LNSSLHHLYC DMEAILKRCS HYQSSTTKAE GHNRLNRSIL FTIDKIFLAR WERPYHDWQN ILICNMAKIP ITPTVMAQTW
101: YYSIFPCPYH TLDFAFSNWR CANESELSGN KAVGERKRES RREKEAEFDH RSTRRRRGRR RRDEGEMDLE TENRIAAILM KEAAELRRQA EKEGVHVYLQ
201: KPQVRGRPNS RFLTATVLGV QQANRAVEVN EMWRVRQKEL ELDDRLKGRL RDEGSSRSHR DYSNSSTSAN KRHASDLCSS SKRVLEDGSC SKEEESLRDD
301: EVEEFLNSRV KRGRGAVGSR MDEAGPYLPH CSHSKDRLLT NPDLRVREEW EHRVVLGPEK PSSLELSESS EDKLHWDRRK KEKKVRSGSS NKQHSRKHGS
401: KEKSRDKKKK KSEKRSKHRK

Best Arabidopsis Sequence Match ( AT4G33690.1 )
(BLAST)

001: MDLETENRIA SILLREAAEL RRQAEKDGVR AYLEKPNVRH RPNSRFLTAT VLGVQQANKA VETNEMWSLR SKEIEFGERL KRKSRDESSN GQSEQNNRRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD

Arabidopsis Description

At4g33690 [Source:UniProtKB/TrEMBL;Acc:Q6NPE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.