CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
endoplasmic reticulum 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48230	Canola	cytosol, extracellular, plastid	25.81	79.28
CDY43847	Canola	nucleus	39.0	69.27
CDX74406	Canola	endoplasmic reticulum	38.12	55.56
CDY71888	Canola	extracellular, golgi	49.56	55.05
CDX74067	Canola	nucleus	34.6	52.91
CDY16047	Canola	golgi, plasma membrane	45.75	51.83
CDY08019	Canola	mitochondrion, nucleus	38.12	44.83
CDY22755	Canola	extracellular	15.54	43.44
CDY26345	Canola	cytosol, nucleus, plastid	37.54	42.67
CDX68998	Canola	nucleus	26.69	36.69
CDX75374	Canola	nucleus	27.27	36.61
CDY48229	Canola	cytosol, mitochondrion	15.25	34.21
Zm00001d019181_P001	Maize	nucleus	25.22	33.46
TraesCS7A01G111400.1	Wheat	nucleus	24.05	32.16
TraesCS7A01G405900.1	Wheat	nucleus	23.46	31.87
Os07t0213400-01	Rice	nucleus, plastid	24.63	31.58
EER97413	Sorghum	nucleus	23.46	31.37
TraesCS7D01G106500.1	Wheat	nucleus	23.46	31.37
Zm00001d021873_P001	Maize	nucleus	23.46	31.01
PGSC0003DMT400013080	Potato	nucleus	23.46	31.01
HORVU7Hr1G023800.2	Barley	cytosol	14.08	30.97
EER96069	Sorghum	nucleus	22.87	30.59
TraesCS7B01G305800.3	Wheat	nucleus	22.29	30.52
TraesCS7B01G009300.1	Wheat	nucleus	22.87	30.12
KRH10674	Soybean	nucleus	24.63	28.0
HORVU7Hr1G094990.2	Barley	nucleus	22.58	27.6
Solyc01g106560.2.1	Tomato	nucleus	24.63	27.36
KRH21674	Soybean	nucleus	23.17	26.78
TraesCS5A01G215300.3	Wheat	nucleus	23.46	24.1
TraesCS5D01G216700.1	Wheat	nucleus	22.87	23.35
VIT_03s0088g01000.t01	Wine grape	nucleus	25.81	20.95
Os08t0192200-01	Rice	nucleus	5.57	20.0
HORVU7Hr1G023920.2	Barley	cytosol, nucleus	9.97	17.0
HORVU7Hr1G023780.5	Barley	cytosol	5.57	15.83
GSMUA_Achr6P16520_001	Banana	nucleus	9.97	13.65
HORVU7Hr1G023790.1	Barley	cytosol, mitochondrion, nucleus	2.05	8.54

Protein Annotations

EnsemblPlants:CDY48061	EnsemblPlantsGene:GSBRNA2T00088730001	ncoils:Coil	PANTHER:PTHR34684	ProteinID:CDY48061	ProteinID:CDY48061.1
SEG:seg	UniParc:UPI0004EEC52B	UniProt:A0A078IDQ7	MapMan:35.2	:	:

Description

BnaA09g22970DBnaA09g22970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IDQ7]

Coordinates

chrLK032751:+:144618..147794

Molecular Weight (calculated)

38686.2 Da

IEP (calculated)

6.622

GRAVY (calculated)

-0.355

Length

341 amino acids

Sequence
(BLAST)

001: MIKQIIWEDV YHTSPNLISP SRSFFLPLSL AIFFLPLCLR FTGDPPSLSH PSSLSHSTGS LRFTLSTRTS VQDSQLFPRS CVQAYMRATT LPAHICFDVQ
101: CLLLLMDLET ENRIASVLLR EAAELRRQAE KDGVRAYLEK PNVRHRPNSR FLTATVLGVQ QLCDILLFVE TIVAQKQENE RLKRKSREES SSSSSQMKRS
201: SSFSKRSLDK KCSSINEERK ITHQSSLDKR LIESFLQSQN KHGRGSVGPR MDETVPYLLT EKVDQLQSSD TRERKVQDDA VEVRGDIEFA VYECLQEEWG
301: VLEKSPEAAL DVDQTIFVVV AEDQEDLLAL RPSSCSACLL Q

Best Arabidopsis Sequence Match ( AT4G33690.1 )
(BLAST)

001: MDLETENRIA SILLREAAEL RRQAEKDGVR AYLEKPNVRH RPNSRFLTAT VLGVQQANKA VETNEMWSLR SKEIEFGERL KRKSRDESSN GQSEQNNRRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD

Arabidopsis Description

At4g33690 [Source:UniProtKB/TrEMBL;Acc:Q6NPE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.