Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
27992503
|
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER97413 | Sorghum | nucleus | 71.8 | 74.9 |
| Zm00001d021873_P001 | Maize | nucleus | 70.68 | 72.87 |
| EER96069 | Sorghum | nucleus | 68.8 | 71.76 |
| TraesCS7A01G111400.1 | Wheat | nucleus | 68.8 | 71.76 |
| TraesCS7D01G106500.1 | Wheat | nucleus | 67.67 | 70.59 |
| Zm00001d019181_P001 | Maize | nucleus | 68.05 | 70.43 |
| TraesCS7B01G009300.1 | Wheat | nucleus | 67.29 | 69.11 |
| Os08t0192200-01 | Rice | nucleus | 23.68 | 66.32 |
| HORVU7Hr1G023920.2 | Barley | cytosol, nucleus | 44.74 | 59.5 |
| KRH50572 | Soybean | cytosol | 22.56 | 57.14 |
| TraesCS5D01G216700.1 | Wheat | nucleus | 66.17 | 52.69 |
| TraesCS5A01G215300.3 | Wheat | nucleus | 65.04 | 52.11 |
| Bra001231.1-P | Field mustard | nucleus | 39.85 | 49.53 |
| CDX74067 | Canola | nucleus | 41.35 | 49.33 |
| HORVU7Hr1G023790.1 | Barley | cytosol, mitochondrion, nucleus | 14.66 | 47.56 |
| HORVU7Hr1G023780.5 | Barley | cytosol | 21.43 | 47.5 |
| Bra011462.1-P | Field mustard | nucleus | 39.85 | 41.73 |
| CDX68998 | Canola | nucleus | 38.72 | 41.53 |
| AT4G33690.1 | Thale cress | nucleus | 38.35 | 41.46 |
| CDX75374 | Canola | nucleus | 39.1 | 40.94 |
| PGSC0003DMT400013080 | Potato | nucleus | 39.47 | 40.7 |
| CDY43847 | Canola | nucleus | 28.95 | 40.1 |
| KRH10674 | Soybean | nucleus | 45.11 | 40.0 |
| CDY08019 | Canola | mitochondrion, nucleus | 41.35 | 37.93 |
| KRH21674 | Soybean | nucleus | 40.98 | 36.95 |
| Bra023945.1-P | Field mustard | cytosol | 36.47 | 34.77 |
| Solyc01g106560.2.1 | Tomato | nucleus | 39.85 | 34.53 |
| CDY48230 | Canola | cytosol, extracellular, plastid | 14.29 | 34.23 |
| CDY26345 | Canola | cytosol, nucleus, plastid | 35.71 | 31.67 |
| GSMUA_Achr6P16520_001 | Banana | nucleus | 28.95 | 30.92 |
| VIT_03s0088g01000.t01 | Wine grape | nucleus | 45.49 | 28.81 |
| CDY71888 | Canola | extracellular, golgi | 33.08 | 28.66 |
| CDY48061 | Canola | plastid | 31.58 | 24.63 |
| CDY16047 | Canola | golgi, plasma membrane | 27.82 | 24.58 |
| CDX74406 | Canola | endoplasmic reticulum | 20.3 | 23.08 |
| CDY22755 | Canola | extracellular | 10.53 | 22.95 |
| CDY48229 | Canola | cytosol, mitochondrion | 11.28 | 19.74 |
Protein Annotations
| EnsemblPlants:Os07t0213400-01 | EnsemblPlantsGene:Os07g0213400 | EntrezGene:4342718 | ncoils:Coil | PANTHER:PTHR34684 | ProteinID:BAC79702.1 |
| ProteinID:BAF21095.1 | ProteinID:BAT00612.1 | RefSeq:XP_015646662.1 | SEG:seg | UniParc:UPI00001B39D6 | UniProt:Q7XIH0 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved hypothetical protein. (Os07t0213400-01)
Coordinates
chr7:+:6232648..6234546
Molecular Weight (calculated)
31032.2 Da
IEP (calculated)
10.427
GRAVY (calculated)
-1.579
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQVGSAPET MDLETENRLA SLLLEEARRL QAEADREGVH AYLRKPNVRH RPNSRFLTAT VRGVQQANRV VEVNEMWRAR EKELELESKM KRSRGLGDAR
101: GEKRKSDLRN QSSSPRVEEE GIAYNSSYSD QEDGLGDDDI EKFLHSRVKR GRGAVGSRMD EPGPYLNVAS RSQENEPNAD TQVEEKWERR VQGPEKPVSL
201: RSRSPDDYWR REALDGEPSS PELHKKKEKK KEKSSEKKDR KERRKKKDKK KSKHRHHHHH KSRQRE
101: GEKRKSDLRN QSSSPRVEEE GIAYNSSYSD QEDGLGDDDI EKFLHSRVKR GRGAVGSRMD EPGPYLNVAS RSQENEPNAD TQVEEKWERR VQGPEKPVSL
201: RSRSPDDYWR REALDGEPSS PELHKKKEKK KEKSSEKKDR KERRKKKDKK KSKHRHHHHH KSRQRE
001: MDLETENRIA SILLREAAEL RRQAEKDGVR AYLEKPNVRH RPNSRFLTAT VLGVQQANKA VETNEMWSLR SKEIEFGERL KRKSRDESSN GQSEQNNRRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD
101: FLKRCTSVDE NVTTTSLSPS SSRSRSKRWQ SEDDDDEGLG DVEVKTFLQS RVKRGRGSVG AMMDEPLPCL PERELSRTSD TGDRKLVIQP ERSPLLRRRT
201: DSSSSDEEEV YKRAHRKRKE HKKKLSKKHK SKEKKRDRKK RKYGRD
Arabidopsis Description
At4g33690 [Source:UniProtKB/TrEMBL;Acc:Q6NPE9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.