Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 3
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
19621931
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0965600-01 | |
| Os02t0758000-01 | |
| Os06t0219500-00 | |
| Os08t0500100-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G02140.1 | Os02t0758000-01 | AT4G25200.1 | 21798944 |
| AT1G02140.1 | Os06t0219500-00 | AT4G25200.1 | 21798944 |
| AT1G02140.1 | Os01t0965600-01 | AT5G22120.1 | 21798944 |
| AT1G02140.1 | Os08t0500100-02 | AT5G56290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13219 | Sorghum | nucleus | 91.25 | 91.82 |
| TraesCS7D01G320000.1 | Wheat | nucleus | 92.5 | 90.8 |
| TraesCS7B01G224300.1 | Wheat | nucleus | 92.5 | 90.8 |
| TraesCS7A01G323400.1 | Wheat | nucleus | 92.5 | 90.8 |
| Zm00001d049723_P001 | Maize | extracellular | 91.25 | 90.68 |
| GSMUA_Achr11P... | Banana | nucleus | 58.75 | 90.38 |
| HORVU7Hr1G077420.4 | Barley | nucleus | 91.88 | 89.63 |
| GSMUA_Achr11P... | Banana | nucleus | 58.12 | 89.42 |
| VIT_16s0013g00610.t01 | Wine grape | nucleus | 83.75 | 88.74 |
| KRH48832 | Soybean | nucleus | 83.12 | 88.08 |
| KRH11252 | Soybean | nucleus | 82.5 | 87.42 |
| CDX90077 | Canola | nucleus | 79.38 | 85.81 |
| CDY38056 | Canola | nucleus | 80.0 | 85.33 |
| Bra033217.1-P | Field mustard | nucleus | 53.75 | 84.31 |
| EER99060 | Sorghum | nucleus | 83.12 | 83.65 |
| Solyc03g093680.2.1 | Tomato | nucleus | 78.12 | 82.78 |
| AT1G02140.1 | Thale cress | nucleus | 76.88 | 82.0 |
| CDY15128 | Canola | nucleus | 79.38 | 81.41 |
| Os08t0107900-01 | Rice | nucleus | 81.88 | 80.37 |
| GSMUA_Achr11P... | Banana | mitochondrion | 48.12 | 61.6 |
| KRH66476 | Soybean | nucleus | 75.0 | 61.54 |
| PGSC0003DMT400054151 | Potato | nucleus | 73.75 | 52.21 |
| Bra032668.1-P | Field mustard | cytosol | 73.75 | 44.36 |
Protein Annotations
| MapMan:17.3.1.1.2 | Gene3D:3.30.1560.10 | EntrezGene:4351998 | ProteinID:ABA97757.1 | EMBL:AF338343 | EMBL:AK063847 |
| ProteinID:BAF29608.1 | ProteinID:BAT16753.1 | ProteinID:EEE53054.1 | GO:GO:0000184 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0006412 | GO:GO:0006417 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0035145 | GO:GO:0051028 | InterPro:IPR036605 | EMBL:KF051008 | InterPro:Mago_nashi |
| InterPro:Mago_nashi_sf | EnsemblPlantsGene:Os12g0287200 | EnsemblPlants:Os12t0287200-01 | UniProt:P49030 | PFAM:PF02792 | PANTHER:PTHR12638 |
| PANTHER:PTHR12638:SF1 | SUPFAM:SSF89817 | UniParc:UPI00000A09A4 | RefSeq:XP_015618267.1 | SEG:seg | : |
Description
mago nashi, Mago protein, Mago nashi protein, rice mago nashi homolog, MAGO NASHI 2Core subunit of exon junction complex (EJC), Multiple organ development and reproduction (Os12t0287200-01)
Coordinates
chr12:+:10959539..10962329
Molecular Weight (calculated)
18430.9 Da
IEP (calculated)
6.126
GRAVY (calculated)
-0.507
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MATGGAAGED VPGGGEFYLR YYVGHKGKFG HEFLEFEFRP DGKLRYANNS NYKNDTMIRK EVFVSPSVLR EARRIIQESE IMKEDDNNWP EPDRVGRQEL
101: EIVMGNEHIS FTTSKIGSLV DVQTSKDPEG LRIFYYLVQD LKCFVFSLIN LHFKIKPIQS
101: EIVMGNEHIS FTTSKIGSLV DVQTSKDPEG LRIFYYLVQD LKCFVFSLIN LHFKIKPIQS
001: MAAEEATEFY LRYYVGHKGK FGHEFLEFEF REDGKLRYAN NSNYKNDTII RKEVFLTPAV LKECKRIVSE SEILKEDDNN WPEPDRVGKQ ELEIVLGNEH
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI
Arabidopsis Description
MEE63MEE63 [Source:UniProtKB/TrEMBL;Acc:A0A178WA48]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.