CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70985
CDX88809
CDX89437
CDY03368
CDY11941
CDY20736
CDY36789
CDY49390
CDY66434
CDY66435
CDY67858

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02140.1	CDX89437	AT4G25200.1	21798944
AT1G02140.1	CDY03368	AT4G25200.1	21798944
AT1G02140.1	CDX70985	AT5G22120.1	21798944
AT1G02140.1	CDX88809	AT5G22120.1	21798944
AT1G02140.1	CDY11941	AT5G56290.1	21798944
AT1G02140.1	CDY20736	AT5G56290.1	21798944
AT1G02140.1	CDY36789	AT5G56290.1	21798944
AT1G02140.1	CDY49390	AT5G56290.1	21798944
AT1G02140.1	CDY66434	AT5G56290.1	21798944
AT1G02140.1	CDY66435	AT5G56290.1	21798944
AT1G02140.1	CDY67858	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033217.1-P	Field mustard	nucleus	68.92	100.0
CDY38056	Canola	nucleus	98.65	97.33
CDY15128	Canola	nucleus	99.32	94.23
AT1G02140.1	Thale cress	nucleus	91.89	90.67
KRH48832	Soybean	nucleus	89.19	87.42
VIT_16s0013g00610.t01	Wine grape	nucleus	88.51	86.75
KRH11252	Soybean	nucleus	87.16	85.43
Solyc03g093680.2.1	Tomato	nucleus	84.46	82.78
GSMUA_Achr11P...	Banana	nucleus	57.43	81.73
GSMUA_Achr11P...	Banana	nucleus	56.76	80.77
EES13219	Sorghum	nucleus	85.81	79.87
Zm00001d049723_P001	Maize	extracellular	86.49	79.5
Os12t0287200-01	Rice	nucleus	85.81	79.38
TraesCS7A01G323400.1	Wheat	nucleus	85.14	77.3
TraesCS7B01G224300.1	Wheat	nucleus	85.14	77.3
TraesCS7D01G320000.1	Wheat	nucleus	85.14	77.3
HORVU7Hr1G077420.4	Barley	nucleus	85.14	76.83
EER99060	Sorghum	nucleus	79.05	73.58
Os08t0107900-01	Rice	nucleus	77.03	69.94
Zm00001d035019_P001	Maize	nucleus	77.7	65.71
KRH66476	Soybean	nucleus	79.05	60.0
GSMUA_Achr11P...	Banana	mitochondrion	48.65	57.6
PGSC0003DMT400054151	Potato	nucleus	81.08	53.1

Protein Annotations

EnsemblPlants:CDX90077	EnsemblPlantsGene:GSBRNA2T00150588001	Gene3D:3.30.1560.10	GO:A0A078DMC6	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:IPR036605	InterPro:Mago_nashi	InterPro:Mago_nashi_sf	PANTHER:PTHR12638
PFAM:PF02792	ProteinID:CDX90077	ProteinID:CDX90077.1	SUPFAM:SSF89817	UniParc:UPI0004EE8B27	MapMan:17.3.1.1.2

Description

BnaA10g00050D

Coordinates

chrLK031861:-:1565921..1567020

Molecular Weight (calculated)

17481.9 Da

IEP (calculated)

5.339

GRAVY (calculated)

-0.471

Length

148 amino acids

Sequence
(BLAST)

001: MEEENEFYLR YYVGHKGKFG HEFLEFEFRP DGKLRYANNS NYKNDTMIRK EVFLTPAVLK ECKRIVSESE IMKEDDFKWP EPDRVGRQEL EIVMGNEHIS
101: FATSKIGSLV DVQSSDDPEG LRIFYYLVQD LKCLVFSLIS LHFKIKPI

Best Arabidopsis Sequence Match ( AT1G02140.1 )
(BLAST)

001: MAAEEATEFY LRYYVGHKGK FGHEFLEFEF REDGKLRYAN NSNYKNDTII RKEVFLTPAV LKECKRIVSE SEILKEDDNN WPEPDRVGKQ ELEIVLGNEH
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI

Arabidopsis Description

MEE63MEE63 [Source:UniProtKB/TrEMBL;Acc:A0A178WA48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.