Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88809 | Canola | nucleus | 90.73 | 88.98 |
| AT5G22120.1 | Thale cress | nucleus | 74.72 | 69.45 |
| KRG89675 | Soybean | extracellular | 13.2 | 51.65 |
| KRH25322 | Soybean | cytosol, nucleus, plastid | 49.72 | 49.58 |
| KRG88868 | Soybean | nucleus | 50.84 | 49.45 |
| Solyc06g074130.2.1 | Tomato | nucleus | 48.03 | 49.42 |
| VIT_06s0004g07340.t01 | Wine grape | nucleus | 36.8 | 47.29 |
| PGSC0003DMT400015182 | Potato | nucleus | 46.91 | 47.18 |
| Os01t0965600-01 | Rice | nucleus | 33.15 | 44.87 |
| EES19096 | Sorghum | nucleus | 43.82 | 42.98 |
| Zm00001d037530_P002 | Maize | nucleus | 42.7 | 41.87 |
| KXG34199 | Sorghum | nucleus | 42.98 | 41.8 |
| TraesCS3B01G582500.1 | Wheat | cytosol, mitochondrion, nucleus | 43.26 | 41.4 |
| GSMUA_Achr10P... | Banana | cytosol | 44.38 | 41.25 |
| TraesCS3A01G513800.1 | Wheat | nucleus | 42.7 | 40.97 |
| TraesCS3D01G521500.1 | Wheat | nucleus | 42.42 | 40.81 |
| VIT_06s0009g00340.t01 | Wine grape | nucleus | 38.76 | 40.71 |
| HORVU3Hr1G112760.2 | Barley | cytosol, nucleus | 42.42 | 38.62 |
Protein Annotations
| EnsemblPlants:CDX70985 | EnsemblPlantsGene:GSBRNA2T00140914001 | Gene3D:3.30.70.330 | GO:A0A078C2A4 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PANTHER:PTHR21678 | PANTHER:PTHR21678:SF0 | ProteinID:CDX70985 | ProteinID:CDX70985.1 | SEG:seg | UniParc:UPI0004EED9E4 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC03g10690D
Coordinates
chrLK031791:-:3060040..3062082
Molecular Weight (calculated)
39038.1 Da
IEP (calculated)
4.687
GRAVY (calculated)
-0.661
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKLEIEDE PNWSERVEDL VASGDVTAAI SFLESLTTNL QSRIGSSSSS SSTELGLQLS AALTQLANLY SSQGLSLKSD ELLARSSLVK QRALDSDLAS
101: SRGSCDAENQ TKTSGSSSEC PLNPTKDDSS DDDWEALADR EPSTLLSVDE LPQISKLSVE EPKFEGPKRR GRGTFTYNKD VMYSESRFED SGDNDMSRGG
201: SEKADESLKA KYGTRHVLVL ADFSPNLRTT DLERLFVDFK DSGFLIRWVN DTTALAVFKT PSTAQEACKS VQCSFTIRVL DDHDSLLGSI SGKDLEPPSQ
301: RPKTSARTAQ RLIAHSMGLK LPASGFGSKE LRDQEAARKS RIVSRQKQRD DAWGDD
101: SRGSCDAENQ TKTSGSSSEC PLNPTKDDSS DDDWEALADR EPSTLLSVDE LPQISKLSVE EPKFEGPKRR GRGTFTYNKD VMYSESRFED SGDNDMSRGG
201: SEKADESLKA KYGTRHVLVL ADFSPNLRTT DLERLFVDFK DSGFLIRWVN DTTALAVFKT PSTAQEACKS VQCSFTIRVL DDHDSLLGSI SGKDLEPPSQ
301: RPKTSARTAQ RLIAHSMGLK LPASGFGSKE LRDQEAARKS RIVSRQKQRD DAWGDD
001: MENTRPNEEE GRISEPNWSE RVEDLVVAGD VTAAISFLES LETNLQSRLG SSSSGERTEF GLQLSAALTQ LADLYSSEGL SLKSDELRTR SSLIKQRALD
101: CDLASSRSSG NVENQSVASS GLKSDPNVSS FDADGKTEDS KVSSSNSAAH DSSDDDWEAL ADVEPSKLLP VEELPEISKL SVEEPKVQGP KRRGRGTFTY
201: KSDAMYSDRD FSESRFDDDS EDNDLSRESE KTDESLKSKY GTRHVLVLAG FSPSLRTTEL EKLFKDFKDS GFIIRWVNDT TALAVFKTPS AALEACKHVQ
301: CSFTIRVLDD NDSLLGSISG KDLEPPSQRP KTSAKTAQRL IAHSMGLKLP ASGFGSKERD QEAARKNRIV SRQKQREDAW GDD
101: CDLASSRSSG NVENQSVASS GLKSDPNVSS FDADGKTEDS KVSSSNSAAH DSSDDDWEAL ADVEPSKLLP VEELPEISKL SVEEPKVQGP KRRGRGTFTY
201: KSDAMYSDRD FSESRFDDDS EDNDLSRESE KTDESLKSKY GTRHVLVLAG FSPSLRTTEL EKLFKDFKDS GFIIRWVNDT TALAVFKTPS AALEACKHVQ
301: CSFTIRVLDD NDSLLGSISG KDLEPPSQRP KTSAKTAQRL IAHSMGLKLP ASGFGSKERD QEAARKNRIV SRQKQREDAW GDD
Arabidopsis Description
At5g22100 [Source:UniProtKB/TrEMBL;Acc:Q9C576]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.