Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006612.1-P | Field mustard | nucleus | 96.97 | 96.7 |
| CDX70985 | Canola | nucleus | 88.98 | 90.73 |
| AT5G22120.1 | Thale cress | nucleus | 73.0 | 69.19 |
| KRG89675 | Soybean | extracellular | 12.67 | 50.55 |
| KRH25322 | Soybean | cytosol, nucleus, plastid | 48.76 | 49.58 |
| KRG88868 | Soybean | nucleus | 49.86 | 49.45 |
| Solyc06g074130.2.1 | Tomato | nucleus | 46.28 | 48.55 |
| VIT_06s0004g07340.t01 | Wine grape | nucleus | 36.09 | 47.29 |
| PGSC0003DMT400015182 | Potato | nucleus | 46.01 | 47.18 |
| Os01t0965600-01 | Rice | nucleus | 32.51 | 44.87 |
| EES19096 | Sorghum | nucleus | 42.98 | 42.98 |
| KXG34199 | Sorghum | nucleus | 42.7 | 42.35 |
| Zm00001d037530_P002 | Maize | nucleus | 42.15 | 42.15 |
| TraesCS3A01G513800.1 | Wheat | nucleus | 42.98 | 42.05 |
| TraesCS3B01G582500.1 | Wheat | cytosol, mitochondrion, nucleus | 42.98 | 41.94 |
| GSMUA_Achr10P... | Banana | cytosol | 44.08 | 41.78 |
| TraesCS3D01G521500.1 | Wheat | nucleus | 42.15 | 41.35 |
| VIT_06s0009g00340.t01 | Wine grape | nucleus | 38.02 | 40.71 |
| HORVU3Hr1G112760.2 | Barley | cytosol, nucleus | 42.98 | 39.9 |
Protein Annotations
| EnsemblPlants:CDX88809 | EnsemblPlantsGene:GSBRNA2T00148875001 | Gene3D:3.30.70.330 | GO:A0A078DJJ4 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PANTHER:PTHR21678 | PANTHER:PTHR21678:SF0 | ProteinID:CDX88809 | ProteinID:CDX88809.1 | SEG:seg | UniParc:UPI0004EEB9D7 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA03g08400D
Coordinates
chrLK031856:+:1033537..1035535
Molecular Weight (calculated)
39952.0 Da
IEP (calculated)
4.619
GRAVY (calculated)
-0.715
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEKRENEDE PNWSERVEDL VASGDVTAAI SFLESLTTNL QSRLGSSSSS SSSTELGLQL AAALTQLANL YSSQGLSLKS DELLTRSSLV KQRALDHDLA
101: SSRGSCDAEN QTKTSDSNVD GCSSSECPLN STKDDASDDD WEALADREPN TLLSVEELPQ ISKLSVEEPK FEGPKRRGRG NFTYNKDVMY SESRFEDSGD
201: NDMSRGGLEK TDESLKAKYG TRHVLVLADF SPNLRTTDLE RLFVDFKDSG FLIRWVNDTT ALAVFKTPST AQEACKSVQC SFTIRVLDDH DSLLGSISGK
301: DLEPPSQRPK TSARTAQRLI AHSMGLKLPA SGFGSKELRD QEAARKSRIV SRQKQRDDAW GDD
101: SSRGSCDAEN QTKTSDSNVD GCSSSECPLN STKDDASDDD WEALADREPN TLLSVEELPQ ISKLSVEEPK FEGPKRRGRG NFTYNKDVMY SESRFEDSGD
201: NDMSRGGLEK TDESLKAKYG TRHVLVLADF SPNLRTTDLE RLFVDFKDSG FLIRWVNDTT ALAVFKTPST AQEACKSVQC SFTIRVLDDH DSLLGSISGK
301: DLEPPSQRPK TSARTAQRLI AHSMGLKLPA SGFGSKELRD QEAARKSRIV SRQKQRDDAW GDD
001: MENTRPNEEE GRISEPNWSE RVEDLVVAGD VTAAISFLES LETNLQSRLG SSSSGERTEF GLQLSAALTQ LADLYSSEGL SLKSDELRTR SSLIKQRALD
101: CDLASSRSSG NVENQSVASS GLKSDPNVSS FDADGKTEDS KVSSSNSAAH DSSDDDWEAL ADVEPSKLLP VEELPEISKL SVEEPKVQGP KRRGRGTFTY
201: KSDAMYSDRD FSESRFDDDS EDNDLSRESE KTDESLKSKY GTRHVLVLAG FSPSLRTTEL EKLFKDFKDS GFIIRWVNDT TALAVFKTPS AALEACKHVQ
301: CSFTIRVLDD NDSLLGSISG KDLEPPSQRP KTSAKTAQRL IAHSMGLKLP ASGFGSKERD QEAARKNRIV SRQKQREDAW GDD
101: CDLASSRSSG NVENQSVASS GLKSDPNVSS FDADGKTEDS KVSSSNSAAH DSSDDDWEAL ADVEPSKLLP VEELPEISKL SVEEPKVQGP KRRGRGTFTY
201: KSDAMYSDRD FSESRFDDDS EDNDLSRESE KTDESLKSKY GTRHVLVLAG FSPSLRTTEL EKLFKDFKDS GFIIRWVNDT TALAVFKTPS AALEACKHVQ
301: CSFTIRVLDD NDSLLGSISG KDLEPPSQRP KTSAKTAQRL IAHSMGLKLP ASGFGSKERD QEAARKNRIV SRQKQREDAW GDD
Arabidopsis Description
At5g22100 [Source:UniProtKB/TrEMBL;Acc:Q9C576]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.