Factsheet for TraesCS3B01G582500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G513800.1	Wheat	nucleus	92.74	92.99
TraesCS3D01G521500.1	Wheat	nucleus	91.94	92.43
HORVU3Hr1G112760.2	Barley	cytosol, nucleus	88.71	84.4
Os01t0965600-01	Rice	nucleus	48.66	68.82
KXG34199	Sorghum	nucleus	67.47	68.58
Zm00001d037530_P002	Maize	nucleus	66.13	67.77
EES19096	Sorghum	nucleus	65.32	66.94
Bra002390.1-P	Field mustard	mitochondrion	10.48	52.7
GSMUA_Achr10P...	Banana	cytosol	47.58	46.21
Solyc06g074130.2.1	Tomato	nucleus	42.47	45.66
KRG88868	Soybean	nucleus	44.89	45.63
KRH25322	Soybean	cytosol, nucleus, plastid	43.28	45.1
KRG89675	Soybean	extracellular	11.02	45.05
Bra002391.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	20.16	44.38
PGSC0003DMT400015182	Potato	nucleus	42.2	44.35
CDX70985	Canola	nucleus	41.4	43.26
CDX88809	Canola	nucleus	41.94	42.98
Bra006612.1-P	Field mustard	nucleus	41.94	42.86
VIT_06s0004g07340.t01	Wine grape	nucleus	31.18	41.88
AT5G22120.1	Thale cress	nucleus	40.59	39.43
VIT_06s0009g00340.t01	Wine grape	nucleus	33.6	36.87
Bra006611.1-P	Field mustard	cytosol	12.63	35.07

Protein Annotations

EnsemblPlants:TraesCS3B01G582500.1	EnsemblPlantsGene:TraesCS3B01G582500	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	PANTHER:PTHR21678	PANTHER:PTHR21678:SF0	SEG:seg
SUPFAM:SSF54928	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:810561114..810563773

Molecular Weight (calculated)

40019.0 Da

IEP (calculated)

5.377

GRAVY (calculated)

-0.765

Length

372 amino acids

Sequence
(BLAST)

001: MDAAAAAAGG HRWTEEVDDL VDAGDVDGAI SLLESVVSSL STAASPPRAG ADLRLATALG DLAGLHASRG NTLQADAIRS RAIVLRLRAQ KEAPQPQALG
101: DHAATENSAS PEAATGSKDS KASASVDKKD EDEDDDWEAI ADRGDETPVR PLVQEARVTT PCSSSEKSST SSSGTKRRGR GSFLYDKSVL YSDQCASERD
201: LDDKGSDPAH GRSKGRADEK DNKDAAKRFG TRHALVLYDF PPSTRTTDLE RIFEKFGDHG VAIRWVNDSV ALAVFRTPSS AKEAQASVPP RYKVRPLKDN
301: DDLLAKIDGT DLEPPTPRPK TSARTAQRLI AHGMGLKQFT TMDAGERKEQ EEARRSRITA RQAARDDAWG ED

Best Arabidopsis Sequence Match ( AT5G22120.1 )
(BLAST)

001: MENTRPNEEE GRISEPNWSE RVEDLVVAGD VTAAISFLES LETNLQSRLG SSSSGERTEF GLQLSAALTQ LADLYSSEGL SLKSDELRTR SSLIKQRALD
101: CDLASSRSSG NVENQSVASS GLKSDPNVSS FDADGKTEDS KVSSSNSAAH DSSDDDWEAL ADVEPSKLLP VEELPEISKL SVEEPKVQGP KRRGRGTFTY
201: KSDAMYSDRD FSESRFDDDS EDNDLSRESE KTDESLKSKY GTRHVLVLAG FSPSLRTTEL EKLFKDFKDS GFIIRWVNDT TALAVFKTPS AALEACKHVQ
301: CSFTIRVLDD NDSLLGSISG KDLEPPSQRP KTSAKTAQRL IAHSMGLKLP ASGFGSKERD QEAARKNRIV SRQKQREDAW GDD

Arabidopsis Description

At5g22100 [Source:UniProtKB/TrEMBL;Acc:Q9C576]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.