Factsheet for HORVU3Hr1G112760.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G513800.1	Wheat	nucleus	87.21	91.91
TraesCS3D01G521500.1	Wheat	nucleus	85.93	90.81
TraesCS3B01G582500.1	Wheat	cytosol, mitochondrion, nucleus	84.4	88.71
Zm00001d037530_P002	Maize	nucleus	63.94	68.87
KXG34199	Sorghum	nucleus	64.19	68.58
Os01t0965600-01	Rice	nucleus	45.78	68.06
EES19096	Sorghum	nucleus	62.4	67.22
Bra002390.1-P	Field mustard	mitochondrion	9.97	52.7
GSMUA_Achr10P...	Banana	cytosol	46.04	47.0
Solyc06g074130.2.1	Tomato	nucleus	40.15	45.38
KRG88868	Soybean	nucleus	42.2	45.08
Bra002391.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	19.44	44.97
KRH25322	Soybean	cytosol, nucleus, plastid	40.66	44.54
PGSC0003DMT400015182	Potato	nucleus	40.15	44.35
KRG89675	Soybean	extracellular	10.23	43.96
CDX88809	Canola	nucleus	39.9	42.98
Bra006612.1-P	Field mustard	nucleus	39.9	42.86
VIT_06s0004g07340.t01	Wine grape	nucleus	30.18	42.6
CDX70985	Canola	nucleus	38.62	42.42
AT5G22120.1	Thale cress	nucleus	37.85	38.64
VIT_06s0009g00340.t01	Wine grape	nucleus	32.48	37.46
Bra006611.1-P	Field mustard	cytosol	11.51	33.58

Protein Annotations

EnsemblPlants:HORVU3Hr1G112760.2	EnsemblPlantsGene:HORVU3Hr1G112760	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	PANTHER:PTHR21678	PANTHER:PTHR21678:SF0	SEG:seg
SUPFAM:SSF54928	UniParc:UPI000B461B12	UniProt:A0A287MQR5	MapMan:35.2	:	:

Description

No Description!

Coordinates

chrchr3H:-:687068709..687071810

Molecular Weight (calculated)

42176.4 Da

IEP (calculated)

5.137

GRAVY (calculated)

-0.760

Length

391 amino acids

Sequence
(BLAST)

001: HHYRLAPVYS PREPTPPMDA SAAADGGHRW TEEVDDLVDA GDVDGAISLL ESVVSSLSTA VPTPPPPGAD LRLATALGDL AGLHASRGNT LQADAIRSRA
101: IVLRLRAQKE APQPQSLGDH ATAENSTSAE AATGSKDSKA ASASVEVKDE DEDDDWEAIA DRGDETPVRP LVQEARVTTP CSSSEKSGAS SSSTKRRGRG
201: SFLYDKSVLY SDQCGSERDL DDKGSDPARG GSKDHADEKD NKDAARRFGT RHALVLYDFP PSTRTTDLER IFEKFGDHGV AIRWVNDSVA LAVFRTPSSA
301: NEAQACVPPR YKVRSLKDND DLLAKIDGTD LEPPTPRPKT SARTAQRLIA HGMGLKQFTT INAGERKEQE EARRSRITAR QAARDDAWGE D

Best Arabidopsis Sequence Match ( AT5G22120.1 )
(BLAST)

001: MENTRPNEEE GRISEPNWSE RVEDLVVAGD VTAAISFLES LETNLQSRLG SSSSGERTEF GLQLSAALTQ LADLYSSEGL SLKSDELRTR SSLIKQRALD
101: CDLASSRSSG NVENQSVASS GLKSDPNVSS FDADGKTEDS KVSSSNSAAH DSSDDDWEAL ADVEPSKLLP VEELPEISKL SVEEPKVQGP KRRGRGTFTY
201: KSDAMYSDRD FSESRFDDDS EDNDLSRESE KTDESLKSKY GTRHVLVLAG FSPSLRTTEL EKLFKDFKDS GFIIRWVNDT TALAVFKTPS AALEACKHVQ
301: CSFTIRVLDD NDSLLGSISG KDLEPPSQRP KTSAKTAQRL IAHSMGLKLP ASGFGSKERD QEAARKNRIV SRQKQREDAW GDD

Arabidopsis Description

At5g22100 [Source:UniProtKB/TrEMBL;Acc:Q9C576]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.