CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037530_P002	Maize	nucleus	92.29	92.29
KXG34199	Sorghum	nucleus	84.57	83.88
Os01t0965600-01	Rice	nucleus	52.07	71.86
TraesCS3A01G513800.1	Wheat	nucleus	67.49	66.04
TraesCS3B01G582500.1	Wheat	cytosol, mitochondrion, nucleus	66.94	65.32
TraesCS3D01G521500.1	Wheat	nucleus	66.12	64.86
HORVU3Hr1G112760.2	Barley	cytosol, nucleus	67.22	62.4
Bra002390.1-P	Field mustard	mitochondrion	11.57	56.76
KRG89675	Soybean	extracellular	12.4	49.45
GSMUA_Achr10P...	Banana	cytosol	48.48	45.95
Bra002391.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	21.21	45.56
KRH25322	Soybean	cytosol, nucleus, plastid	44.08	44.82
KRG88868	Soybean	nucleus	44.63	44.26
CDX70985	Canola	nucleus	42.98	43.82
Solyc06g074130.2.1	Tomato	nucleus	41.32	43.35
CDX88809	Canola	nucleus	42.98	42.98
Bra006612.1-P	Field mustard	nucleus	42.7	42.58
PGSC0003DMT400015182	Potato	nucleus	41.05	42.09
VIT_06s0004g07340.t01	Wine grape	nucleus	31.68	41.52
AT5G22120.1	Thale cress	nucleus	42.15	39.95
VIT_06s0009g00340.t01	Wine grape	nucleus	33.06	35.4
Bra006611.1-P	Field mustard	cytosol	12.4	33.58

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	EntrezGene:8080925	UniProt:C5Z0Q6	EnsemblPlants:EES19096	ProteinID:EES19096
ProteinID:EES19096.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0035145	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PANTHER:PTHR21678
PANTHER:PTHR21678:SF0	InterPro:RBD_domain_sf	EnsemblPlantsGene:SORBI_3009G056800	SUPFAM:SSF54928	UniParc:UPI0001A88D69	RefSeq:XP_002440666.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:5770206..5774952

Molecular Weight (calculated)

39225.0 Da

IEP (calculated)

4.637

GRAVY (calculated)

-0.683

Length

363 amino acids

Sequence
(BLAST)

001: MDGPRWTEEV DDLVDAGDVD AAIALLESVV SGLSTSAAAP ATDLRLATAL GDLAGLHASR GDTLRADELR ARAIALRSRA AAPWTGTLGD QELPEQCSSQ
101: ECATGSKDSE VSANTDKNNE DGEDDWEAIA DSGALDDTLV RSLEQGARVS SCSSSERSST PSSGPKRRGR GSFLYNKSVL YSDQCGSERE LDDKWSNPPV
201: GSEDHVNGPE NNAATAAAQF GTRHVLVLYD FSPSTRTTDL ERIFEKFGDH GVAIRWINDT SALAVFQTPS AANEAQACIP PRYKVRSLKQ DDDLLTKIDG
301: RDLDPPKPRP KTSARTAQRL IAHGMGLKQF TNFGSDELKK QEGERKNRIA TRQAMRDEAW GSD

Best Arabidopsis Sequence Match ( AT5G22120.1 )
(BLAST)

001: MENTRPNEEE GRISEPNWSE RVEDLVVAGD VTAAISFLES LETNLQSRLG SSSSGERTEF GLQLSAALTQ LADLYSSEGL SLKSDELRTR SSLIKQRALD
101: CDLASSRSSG NVENQSVASS GLKSDPNVSS FDADGKTEDS KVSSSNSAAH DSSDDDWEAL ADVEPSKLLP VEELPEISKL SVEEPKVQGP KRRGRGTFTY
201: KSDAMYSDRD FSESRFDDDS EDNDLSRESE KTDESLKSKY GTRHVLVLAG FSPSLRTTEL EKLFKDFKDS GFIIRWVNDT TALAVFKTPS AALEACKHVQ
301: CSFTIRVLDD NDSLLGSISG KDLEPPSQRP KTSAKTAQRL IAHSMGLKLP ASGFGSKERD QEAARKNRIV SRQKQREDAW GDD

Arabidopsis Description

At5g22100 [Source:UniProtKB/TrEMBL;Acc:Q9C576]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.