CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88868	Soybean	nucleus	87.11	84.97
KRG89675	Soybean	extracellular	15.41	60.44
Bra002390.1-P	Field mustard	mitochondrion	12.04	58.11
Bra002391.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	24.37	51.48
Solyc06g074130.2.1	Tomato	nucleus	48.74	50.29
CDX70985	Canola	nucleus	49.58	49.72
PGSC0003DMT400015182	Potato	nucleus	49.3	49.72
VIT_06s0004g07340.t01	Wine grape	nucleus	38.38	49.46
CDX88809	Canola	nucleus	49.58	48.76
Bra006612.1-P	Field mustard	nucleus	49.3	48.35
AT5G22120.1	Thale cress	nucleus	50.98	47.52
Os01t0965600-01	Rice	nucleus	34.45	46.77
EES19096	Sorghum	nucleus	44.82	44.08
Zm00001d037530_P002	Maize	nucleus	44.26	43.53
TraesCS3A01G513800.1	Wheat	nucleus	45.1	43.4
TraesCS3B01G582500.1	Wheat	cytosol, mitochondrion, nucleus	45.1	43.28
VIT_06s0009g00340.t01	Wine grape	nucleus	40.62	42.77
TraesCS3D01G521500.1	Wheat	nucleus	44.26	42.7
GSMUA_Achr10P...	Banana	cytosol	45.66	42.56
KXG34199	Sorghum	nucleus	42.86	41.8
HORVU3Hr1G112760.2	Barley	cytosol, nucleus	44.54	40.66
Bra006611.1-P	Field mustard	cytosol	14.57	38.81

Protein Annotations

EMBL:ACUP02007236	EnsemblPlants:KRH25322	EnsemblPlantsGene:GLYMA_12G094900	EntrezGene:100815577	Gene3D:3.30.70.330	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0035145	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PANTHER:PTHR21678	PANTHER:PTHR21678:SF0	ProteinID:KRH25321.1	ProteinID:KRH25322	ProteinID:KRH25322.1	SEG:seg
UniParc:UPI000233C424	UniProt:K7LTX3	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:7899573..7905000

Molecular Weight (calculated)

39411.7 Da

IEP (calculated)

4.963

GRAVY (calculated)

-0.608

Length

357 amino acids

Sequence
(BLAST)

001: MEKGIQNWSE SVEDLVDAGD VESAISLLES VAETLNPSDS ASALSDLANL YSSRGFSLKA DHLLSRASLL KQLHHSNTPA ERVPKESKED GVVKSTTVAS
101: RRAAEGSVEK RGEFPAQTSA AGGSSDEDWE AIADLEPDEL LPTVSWDCSS GISNLKLENA KSGTPKRRGR GTFSYEKKEL YSDQLLDRSV VDVEREETPR
201: SSEDNTDVQI SKYGTGHVLV LADFSPSTRT TELEKLFENF QDRGFVIRWV NDTVALAVFR TPAVALEALN SVRCSFTTRI LDEDDTLLSS IKARDLEPPR
301: LRPKTSAQAA QRLIAHGMGL KLSSTGVGSR EYRKQEDARR ERIVTRQKLR DEAWGDH

Best Arabidopsis Sequence Match ( AT5G22120.1 )
(BLAST)

001: MENTRPNEEE GRISEPNWSE RVEDLVVAGD VTAAISFLES LETNLQSRLG SSSSGERTEF GLQLSAALTQ LADLYSSEGL SLKSDELRTR SSLIKQRALD
101: CDLASSRSSG NVENQSVASS GLKSDPNVSS FDADGKTEDS KVSSSNSAAH DSSDDDWEAL ADVEPSKLLP VEELPEISKL SVEEPKVQGP KRRGRGTFTY
201: KSDAMYSDRD FSESRFDDDS EDNDLSRESE KTDESLKSKY GTRHVLVLAG FSPSLRTTEL EKLFKDFKDS GFIIRWVNDT TALAVFKTPS AALEACKHVQ
301: CSFTIRVLDD NDSLLGSISG KDLEPPSQRP KTSAKTAQRL IAHSMGLKLP ASGFGSKERD QEAARKNRIV SRQKQREDAW GDD

Arabidopsis Description

At5g22100 [Source:UniProtKB/TrEMBL;Acc:Q9C576]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.