CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25322	Soybean	cytosol, nucleus, plastid	84.97	87.11
KRG89675	Soybean	extracellular	15.85	63.74
Bra002390.1-P	Field mustard	mitochondrion	12.57	62.16
Bra002391.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	24.86	53.85
Solyc06g074130.2.1	Tomato	nucleus	50.0	52.89
PGSC0003DMT400015182	Potato	nucleus	50.0	51.69
CDX70985	Canola	nucleus	49.45	50.84
VIT_06s0004g07340.t01	Wine grape	nucleus	37.98	50.18
CDX88809	Canola	nucleus	49.45	49.86
Bra006612.1-P	Field mustard	nucleus	49.18	49.45
AT5G22120.1	Thale cress	nucleus	51.09	48.83
Os01t0965600-01	Rice	nucleus	33.61	46.77
TraesCS3B01G582500.1	Wheat	cytosol, mitochondrion, nucleus	45.63	44.89
EES19096	Sorghum	nucleus	44.26	44.63
Zm00001d037530_P002	Maize	nucleus	43.99	44.35
TraesCS3D01G521500.1	Wheat	nucleus	44.81	44.32
TraesCS3A01G513800.1	Wheat	nucleus	44.81	44.2
GSMUA_Achr10P...	Banana	cytosol	46.17	44.13
VIT_06s0009g00340.t01	Wine grape	nucleus	40.44	43.66
KXG34199	Sorghum	nucleus	42.35	42.35
HORVU3Hr1G112760.2	Barley	cytosol, nucleus	45.08	42.2
Bra006611.1-P	Field mustard	cytosol	14.75	40.3

Protein Annotations

EnsemblPlants:KRG88868	EnsemblPlantsGene:GLYMA_U009500	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0035145	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PANTHER:PTHR21678	PANTHER:PTHR21678:SF0	ProteinID:KRG88868	ProteinID:KRG88868.1	SEG:seg
UniParc:UPI000233D83F	UniProt:I1LKM0	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chrscaffold_21:+:57902..62731

Molecular Weight (calculated)

40189.5 Da

IEP (calculated)

4.794

GRAVY (calculated)

-0.639

Length

366 amino acids

Sequence
(BLAST)

001: MEKEKGIENW SEAVEDLVDA GDVESAISLL ESVVETLNPS DSASQLPLAS ALSDLANLYS SKGFSLKADH LLSRASVLKQ LHHSNSPGEQ VPKESKEDGA
101: VKSTSVASRR AAEGSVEKRA AEFPAQTSAG GGCSDEDWEA IADLEPDELL PTVSSDCSSG ISNLKLENAK SGTPKRRGRG TFSYEKKELY SDQLLDSSVV
201: DVEQEETHRS SEDNKDVQNS KYGTSHVLVL ADFSPSTRTT ELEKLFENFK DRGFVIRWVN DTVALAVFRT PPVALEALNS VRCSFTTRIL DEDDTLLSSI
301: KARDLEPPRQ RPKTSAQAAQ RLIAHSMGLK LSSTGVGSRE YRKQEDARRE RIVTRQKLRD EAWGDD

Best Arabidopsis Sequence Match ( AT5G22120.1 )
(BLAST)

001: MENTRPNEEE GRISEPNWSE RVEDLVVAGD VTAAISFLES LETNLQSRLG SSSSGERTEF GLQLSAALTQ LADLYSSEGL SLKSDELRTR SSLIKQRALD
101: CDLASSRSSG NVENQSVASS GLKSDPNVSS FDADGKTEDS KVSSSNSAAH DSSDDDWEAL ADVEPSKLLP VEELPEISKL SVEEPKVQGP KRRGRGTFTY
201: KSDAMYSDRD FSESRFDDDS EDNDLSRESE KTDESLKSKY GTRHVLVLAG FSPSLRTTEL EKLFKDFKDS GFIIRWVNDT TALAVFKTPS AALEACKHVQ
301: CSFTIRVLDD NDSLLGSISG KDLEPPSQRP KTSAKTAQRL IAHSMGLKLP ASGFGSKERD QEAARKNRIV SRQKQREDAW GDD

Arabidopsis Description

At5g22100 [Source:UniProtKB/TrEMBL;Acc:Q9C576]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.