Factsheet for VIT_06s0004g07340.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0009g00340.t01	Wine grape	nucleus	92.78	75.81
Bra002390.1-P	Field mustard	mitochondrion	15.88	59.46
Bra002391.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	33.21	54.44
KRG89675	Soybean	extracellular	15.88	48.35
Solyc06g074130.2.1	Tomato	nucleus	55.6	44.51
Os01t0965600-01	Rice	nucleus	41.52	43.73
PGSC0003DMT400015182	Potato	nucleus	54.51	42.66
Bra006611.1-P	Field mustard	cytosol	19.13	39.55
KRH25322	Soybean	cytosol, nucleus, plastid	49.46	38.38
KRG88868	Soybean	nucleus	50.18	37.98
CDX70985	Canola	nucleus	47.29	36.8
CDX88809	Canola	nucleus	47.29	36.09
Bra006612.1-P	Field mustard	nucleus	46.93	35.71
AT5G22120.1	Thale cress	nucleus	48.38	34.99
GSMUA_Achr10P...	Banana	cytosol	45.49	32.9
EES19096	Sorghum	nucleus	41.52	31.68
TraesCS3A01G513800.1	Wheat	nucleus	42.24	31.54
Zm00001d037530_P002	Maize	nucleus	41.16	31.41
TraesCS3B01G582500.1	Wheat	cytosol, mitochondrion, nucleus	41.88	31.18
KXG34199	Sorghum	nucleus	41.16	31.15
TraesCS3D01G521500.1	Wheat	nucleus	41.16	30.81
HORVU3Hr1G112760.2	Barley	cytosol, nucleus	42.6	30.18

Protein Annotations

EntrezGene:100246673	wikigene:100246673	Gene3D:3.30.70.330	MapMan:35.2	ProteinID:CCB43442	ProteinID:CCB43442.1
UniProt:F6GUK9	EMBL:FN594951	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0035145	InterPro:IPR012677	EntrezGene:LOC100246673	wikigene:LOC100246673	InterPro:Nucleotide-bd_a/b_plait_sf	PANTHER:PTHR21678
PANTHER:PTHR21678:SF0	UniParc:UPI00021080A6	ArrayExpress:VIT_06s0004g07340	EnsemblPlantsGene:VIT_06s0004g07340	EnsemblPlants:VIT_06s0004g07340.t01	RefSeq:XP_002277847
RefSeq:XP_002277847.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:8102428..8129044

Molecular Weight (calculated)

31126.2 Da

IEP (calculated)

4.921

GRAVY (calculated)

-0.749

Length

277 amino acids

Sequence
(BLAST)

001: MVKDSKENQV IPVEDVVRKD SVEYQALSSN GSLLCDASAH DGSSNDDWET IADRAPNELL SPPSLPDVST LSMEDNKAQI TKRRGRGTFS YQKEELYSDR
101: QSEGSTLDDT RDEAVCHDSE EKTEMRHSRY GTQHVLVLAD FPPSTRTTNL EKLFENFRDR EVVIRWVNDT MALASQSSNA AIEACNFVRC PFTVRVLDET
201: DILLNSIQTR DLEPPRQRPE TSARTAGRLI AQAMGMKLPS TSFGSRELKK QEAARKQRIV ARKILKDDAW GSDDGVN

Best Arabidopsis Sequence Match ( AT5G22120.1 )
(BLAST)

001: MENTRPNEEE GRISEPNWSE RVEDLVVAGD VTAAISFLES LETNLQSRLG SSSSGERTEF GLQLSAALTQ LADLYSSEGL SLKSDELRTR SSLIKQRALD
101: CDLASSRSSG NVENQSVASS GLKSDPNVSS FDADGKTEDS KVSSSNSAAH DSSDDDWEAL ADVEPSKLLP VEELPEISKL SVEEPKVQGP KRRGRGTFTY
201: KSDAMYSDRD FSESRFDDDS EDNDLSRESE KTDESLKSKY GTRHVLVLAG FSPSLRTTEL EKLFKDFKDS GFIIRWVNDT TALAVFKTPS AALEACKHVQ
301: CSFTIRVLDD NDSLLGSISG KDLEPPSQRP KTSAKTAQRL IAHSMGLKLP ASGFGSKERD QEAARKNRIV SRQKQREDAW GDD

Arabidopsis Description

At5g22100 [Source:UniProtKB/TrEMBL;Acc:Q9C576]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.