Factsheet for AT5G22120.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002390.1-P	Field mustard	mitochondrion	15.4	79.73
Bra002391.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	33.94	76.92
CDX70985	Canola	nucleus	69.45	74.72
CDX88809	Canola	nucleus	69.19	73.0
Bra006612.1-P	Field mustard	nucleus	68.15	71.7
Bra006611.1-P	Field mustard	cytosol	19.84	56.72
KRG89675	Soybean	extracellular	12.27	51.65
Solyc06g074130.2.1	Tomato	nucleus	46.48	51.45
KRG88868	Soybean	nucleus	48.83	51.09
KRH25322	Soybean	cytosol, nucleus, plastid	47.52	50.98
PGSC0003DMT400015182	Potato	nucleus	46.48	50.28
VIT_06s0004g07340.t01	Wine grape	nucleus	34.99	48.38
Os01t0965600-01	Rice	nucleus	29.24	42.59
EES19096	Sorghum	nucleus	39.95	42.15
GSMUA_Achr10P...	Banana	cytosol	41.25	41.25
VIT_06s0009g00340.t01	Wine grape	nucleus	36.29	41.0
KXG34199	Sorghum	nucleus	39.16	40.98
TraesCS3B01G582500.1	Wheat	cytosol, mitochondrion, nucleus	39.43	40.59
Zm00001d037530_P002	Maize	nucleus	38.12	40.22
TraesCS3A01G513800.1	Wheat	nucleus	38.9	40.16
TraesCS3D01G521500.1	Wheat	nucleus	38.38	39.73
HORVU3Hr1G112760.2	Barley	cytosol, nucleus	38.64	37.85

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	EntrezGene:832273	UniProt:A0A178UBF9	ProteinID:AED92985.1	EMBL:AK175418
EMBL:AK175438	ArrayExpress:AT5G22120	EnsemblPlantsGene:AT5G22120	RefSeq:AT5G22120	TAIR:AT5G22120	RefSeq:AT5G22120-TAIR-G
EnsemblPlants:AT5G22120.1	TAIR:AT5G22120.1	EMBL:AY093778	EMBL:AY149952	ProteinID:CAC34505.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008150	GO:GO:0035145	InterPro:IPR012677	RefSeq:NP_680198.1	InterPro:Nucleotide-bd_a/b_plait_sf	ProteinID:OAO90999.1
PO:PO:0000005	PO:PO:0000293	PANTHER:PTHR21678	PANTHER:PTHR21678:SF0	UniProt:Q9C576	InterPro:RBD_domain_sf
SUPFAM:SSF54928	UniParc:UPI00000AC37A	SEG:seg	:	:	:

Description

At5g22100 [Source:UniProtKB/TrEMBL;Acc:Q9C576]

Coordinates

chr5:-:7334314..7337018

Molecular Weight (calculated)

42094.3 Da

IEP (calculated)

4.601

GRAVY (calculated)

-0.741

Length

383 amino acids

Sequence
(BLAST)

001: MENTRPNEEE GRISEPNWSE RVEDLVVAGD VTAAISFLES LETNLQSRLG SSSSGERTEF GLQLSAALTQ LADLYSSEGL SLKSDELRTR SSLIKQRALD
101: CDLASSRSSG NVENQSVASS GLKSDPNVSS FDADGKTEDS KVSSSNSAAH DSSDDDWEAL ADVEPSKLLP VEELPEISKL SVEEPKVQGP KRRGRGTFTY
201: KSDAMYSDRD FSESRFDDDS EDNDLSRESE KTDESLKSKY GTRHVLVLAG FSPSLRTTEL EKLFKDFKDS GFIIRWVNDT TALAVFKTPS AALEACKHVQ
301: CSFTIRVLDD NDSLLGSISG KDLEPPSQRP KTSAKTAQRL IAHSMGLKLP ASGFGSKERD QEAARKNRIV SRQKQREDAW GDD

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.