Factsheet for Os01t0965600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002390.1-P	Field mustard	mitochondrion	16.73	59.46
Zm00001d037530_P002	Maize	nucleus	73.76	53.44
KXG34199	Sorghum	nucleus	74.14	53.28
EES19096	Sorghum	nucleus	71.86	52.07
TraesCS3A01G513800.1	Wheat	nucleus	69.58	49.33
TraesCS3B01G582500.1	Wheat	cytosol, mitochondrion, nucleus	68.82	48.66
TraesCS3D01G521500.1	Wheat	nucleus	68.06	48.38
KRG89675	Soybean	extracellular	15.97	46.15
HORVU3Hr1G112760.2	Barley	cytosol, nucleus	68.06	45.78
Bra002391.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	29.28	45.56
VIT_06s0004g07340.t01	Wine grape	nucleus	43.73	41.52
Solyc06g074130.2.1	Tomato	nucleus	48.29	36.71
PGSC0003DMT400015182	Potato	nucleus	49.05	36.44
VIT_06s0009g00340.t01	Wine grape	nucleus	45.63	35.4
Bra006611.1-P	Field mustard	cytosol	17.87	35.07
GSMUA_Achr10P...	Banana	cytosol	50.57	34.73
KRH25322	Soybean	cytosol, nucleus, plastid	46.77	34.45
KRG88868	Soybean	nucleus	46.77	33.61
CDX70985	Canola	nucleus	44.87	33.15
CDX88809	Canola	nucleus	44.87	32.51
Bra006612.1-P	Field mustard	nucleus	44.49	32.14
AT5G22120.1	Thale cress	nucleus	42.59	29.24

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	EntrezGene:4324467	EMBL:AK073409	ProteinID:BAD88249.1	ProteinID:BAF07409.1
ProteinID:BAS76372.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0035145	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os01g0965600
EnsemblPlants:Os01t0965600-01	PANTHER:PTHR21678	PANTHER:PTHR21678:SF0	UniProt:Q5JJV8	InterPro:RBD_domain_sf	SUPFAM:SSF54928
UniParc:UPI00004C2BEC	RefSeq:XP_015623114.1	SEG:seg	:	:	:

Description

Similar to growth inhibition and differentiation-related protein 88. (Os01t0965600-01)

Coordinates

chr1:-:42574874..42577817

Molecular Weight (calculated)

29186.6 Da

IEP (calculated)

4.913

GRAVY (calculated)

-0.949

Length

263 amino acids

Sequence
(BLAST)

001: MGSKDSQVEA TLQDGNKEDE EDDWEAIADR GENDETLTLA RSLEQQAKVS PSSSSEKIST PSSGPKRRGR GSFLYDKSVL YSDQCGLEND MDEQESNDQS
101: GSKGRVDEQK HKSNAAAKQY GTRHVLVLYD FPPSTLAADL EKIFDKFGDH GVAIRWVNDT VALAVFRTPS AANEAQACIP PRYKVRPLKE DDDLLTKNDG
201: IDLEPPTPRP KTSARTAQRL IAHGMGLRQF TNFGSDELKK QEEARRSRIA ARQALRDDAW GSD

Best Arabidopsis Sequence Match ( AT5G22120.1 )
(BLAST)

001: MENTRPNEEE GRISEPNWSE RVEDLVVAGD VTAAISFLES LETNLQSRLG SSSSGERTEF GLQLSAALTQ LADLYSSEGL SLKSDELRTR SSLIKQRALD
101: CDLASSRSSG NVENQSVASS GLKSDPNVSS FDADGKTEDS KVSSSNSAAH DSSDDDWEAL ADVEPSKLLP VEELPEISKL SVEEPKVQGP KRRGRGTFTY
201: KSDAMYSDRD FSESRFDDDS EDNDLSRESE KTDESLKSKY GTRHVLVLAG FSPSLRTTEL EKLFKDFKDS GFIIRWVNDT TALAVFKTPS AALEACKHVQ
301: CSFTIRVLDD NDSLLGSISG KDLEPPSQRP KTSAKTAQRL IAHSMGLKLP ASGFGSKERD QEAARKNRIV SRQKQREDAW GDD

Arabidopsis Description

At5g22100 [Source:UniProtKB/TrEMBL;Acc:Q9C576]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.