Factsheet for VIT_06s0009g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g07340.t01	Wine grape	nucleus	75.81	92.78
Bra002390.1-P	Field mustard	mitochondrion	12.68	58.11
Bra002391.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	27.14	54.44
KRG89675	Soybean	extracellular	13.86	51.65
Solyc06g074130.2.1	Tomato	nucleus	48.08	47.11
Os01t0965600-01	Rice	nucleus	35.4	45.63
PGSC0003DMT400015182	Potato	nucleus	46.9	44.92
KRH25322	Soybean	cytosol, nucleus, plastid	42.77	40.62
KRG88868	Soybean	nucleus	43.66	40.44
Bra006611.1-P	Field mustard	cytosol	15.63	39.55
CDX70985	Canola	nucleus	40.71	38.76
CDX88809	Canola	nucleus	40.71	38.02
Bra006612.1-P	Field mustard	nucleus	40.41	37.64
AT5G22120.1	Thale cress	nucleus	41.0	36.29
GSMUA_Achr10P...	Banana	cytosol	38.94	34.46
TraesCS3A01G513800.1	Wheat	nucleus	37.46	34.23
TraesCS3B01G582500.1	Wheat	cytosol, mitochondrion, nucleus	36.87	33.6
Zm00001d037530_P002	Maize	nucleus	35.69	33.33
KXG34199	Sorghum	nucleus	35.99	33.33
TraesCS3D01G521500.1	Wheat	nucleus	36.28	33.24
EES19096	Sorghum	nucleus	35.4	33.06
HORVU3Hr1G112760.2	Barley	cytosol, nucleus	37.46	32.48

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.2	ProteinID:CBI24430	ProteinID:CBI24430.3	UniProt:D7T1Q0	EMBL:FN595504
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0035145	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PANTHER:PTHR21678	PANTHER:PTHR21678:SF0
InterPro:RBD_domain_sf	SUPFAM:SSF54928	UniParc:UPI0001BE242E	ArrayExpress:VIT_06s0009g00340	EnsemblPlantsGene:VIT_06s0009g00340	EnsemblPlants:VIT_06s0009g00340.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:10638700..10658778

Molecular Weight (calculated)

38561.4 Da

IEP (calculated)

5.007

GRAVY (calculated)

-0.613

Length

339 amino acids

Sequence
(BLAST)

001: MTIDELESSP LTAQYPDLHL HKSIQYFSPN AAFRSMSEFK CIEMVKDSKE NQVIPVEDVV RKDSVEYQAL SSNGSLPCDA SAHDGSSDDD WETIADRAPN
101: ELLSPPSLPD VSTLSMEDNK AQITKRRGRG TFSYQKEELY SDRQSEGSTL DDTRDEAVCH DSEEKTEIRH SRYGTQHVLV LADFPPSMRT TDLEKLFENF
201: RDREVVIRWV NDTMALAVFR TATIAIEACN FVRCPFTVRV LDETDILLNS IQTRDLEPPR QRPETSARTA GRLIAQAMGM KLPSTSFGSR ELKKQEEARK
301: QRIVARKNLK DDAWGSDDVK VYDFLIMLKI FKGYGNCIK

Best Arabidopsis Sequence Match ( AT5G22120.1 )
(BLAST)

001: MENTRPNEEE GRISEPNWSE RVEDLVVAGD VTAAISFLES LETNLQSRLG SSSSGERTEF GLQLSAALTQ LADLYSSEGL SLKSDELRTR SSLIKQRALD
101: CDLASSRSSG NVENQSVASS GLKSDPNVSS FDADGKTEDS KVSSSNSAAH DSSDDDWEAL ADVEPSKLLP VEELPEISKL SVEEPKVQGP KRRGRGTFTY
201: KSDAMYSDRD FSESRFDDDS EDNDLSRESE KTDESLKSKY GTRHVLVLAG FSPSLRTTEL EKLFKDFKDS GFIIRWVNDT TALAVFKTPS AALEACKHVQ
301: CSFTIRVLDD NDSLLGSISG KDLEPPSQRP KTSAKTAQRL IAHSMGLKLP ASGFGSKERD QEAARKNRIV SRQKQREDAW GDD

Arabidopsis Description

At5g22100 [Source:UniProtKB/TrEMBL;Acc:Q9C576]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.