Factsheet for Solyc06g074130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015182	Potato	nucleus	88.15	86.16
Bra002390.1-P	Field mustard	mitochondrion	13.29	62.16
VIT_06s0004g07340.t01	Wine grape	nucleus	44.51	55.6
Bra002391.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	25.43	52.07
KRG89675	Soybean	extracellular	13.29	50.55
KRG88868	Soybean	nucleus	52.89	50.0
KRH25322	Soybean	cytosol, nucleus, plastid	50.29	48.74
Os01t0965600-01	Rice	nucleus	36.71	48.29
VIT_06s0009g00340.t01	Wine grape	nucleus	47.11	48.08
CDX70985	Canola	nucleus	49.42	48.03
AT5G22120.1	Thale cress	nucleus	51.45	46.48
CDX88809	Canola	nucleus	48.55	46.28
Bra006612.1-P	Field mustard	nucleus	48.27	45.88
GSMUA_Achr10P...	Banana	cytosol	48.84	44.13
TraesCS3B01G582500.1	Wheat	cytosol, mitochondrion, nucleus	45.66	42.47
TraesCS3D01G521500.1	Wheat	nucleus	45.38	42.43
KXG34199	Sorghum	nucleus	44.51	42.08
TraesCS3A01G513800.1	Wheat	nucleus	44.51	41.51
EES19096	Sorghum	nucleus	43.35	41.32
Zm00001d037530_P002	Maize	nucleus	43.06	41.05
Bra006611.1-P	Field mustard	cytosol	15.61	40.3
HORVU3Hr1G112760.2	Barley	cytosol, nucleus	45.38	40.15

Protein Annotations

EnsemblPlants:Solyc06g074130.2.1	EnsemblPlantsGene:Solyc06g074130.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0035145	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	PANTHER:PTHR21678	PANTHER:PTHR21678:SF0	SEG:seg	SUPFAM:SSF54928
UniParc:UPI00027663B3	UniProt:K4C9D1	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr6:+:45848608..45854187

Molecular Weight (calculated)

38758.6 Da

IEP (calculated)

4.441

GRAVY (calculated)

-0.833

Length

346 amino acids

Sequence
(BLAST)

001: MDSDTNWSEK VEDLVDAGEI DGAISLLEEL VAKLEYESQN SSNSQLPLST ALLELSKLYS TQGLSLRADQ TRSKAFLIKQ QQENRDVNAT KESTGDGISG
101: DNKDHASLQI DASQNDEDDD WEAIADRAPD ELLSPQHLPE VSKISLQDSK VQAPKRRGRG TFSYQKQSLY SDQQSDEPAD DDIEDEAVSS TPEGSSDTKN
201: LNYGTRHVLV LADFPPSTKT NDLEKLLEKF KDVAIRWVND TVALAVFRTP TLALEASNSI HCPFTVRVLC EEDELLNSIP PRDLEPPRRR PQTSARTAQR
301: LIAQSMGIKL PSTDFGSREY RRQEEARKNR IVSRQNLKHD AWGDDE

Best Arabidopsis Sequence Match ( AT5G22120.1 )
(BLAST)

001: MENTRPNEEE GRISEPNWSE RVEDLVVAGD VTAAISFLES LETNLQSRLG SSSSGERTEF GLQLSAALTQ LADLYSSEGL SLKSDELRTR SSLIKQRALD
101: CDLASSRSSG NVENQSVASS GLKSDPNVSS FDADGKTEDS KVSSSNSAAH DSSDDDWEAL ADVEPSKLLP VEELPEISKL SVEEPKVQGP KRRGRGTFTY
201: KSDAMYSDRD FSESRFDDDS EDNDLSRESE KTDESLKSKY GTRHVLVLAG FSPSLRTTEL EKLFKDFKDS GFIIRWVNDT TALAVFKTPS AALEACKHVQ
301: CSFTIRVLDD NDSLLGSISG KDLEPPSQRP KTSAKTAQRL IAHSMGLKLP ASGFGSKERD QEAARKNRIV SRQKQREDAW GDD

Arabidopsis Description

At5g22100 [Source:UniProtKB/TrEMBL;Acc:Q9C576]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.