Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G582500.1 | Wheat | cytosol, mitochondrion, nucleus | 92.99 | 92.74 |
| TraesCS3D01G521500.1 | Wheat | nucleus | 92.18 | 92.43 |
| HORVU3Hr1G112760.2 | Barley | cytosol, nucleus | 91.91 | 87.21 |
| Os01t0965600-01 | Rice | nucleus | 49.33 | 69.58 |
| KXG34199 | Sorghum | nucleus | 68.46 | 69.4 |
| Zm00001d037530_P002 | Maize | nucleus | 67.12 | 68.59 |
| EES19096 | Sorghum | nucleus | 66.04 | 67.49 |
| Bra002390.1-P | Field mustard | mitochondrion | 10.51 | 52.7 |
| GSMUA_Achr10P... | Banana | cytosol | 47.71 | 46.21 |
| KRH25322 | Soybean | cytosol, nucleus, plastid | 43.4 | 45.1 |
| KRG89675 | Soybean | extracellular | 11.05 | 45.05 |
| KRG88868 | Soybean | nucleus | 44.2 | 44.81 |
| Solyc06g074130.2.1 | Tomato | nucleus | 41.51 | 44.51 |
| Bra002391.1-P | Field mustard | cytosol, endoplasmic reticulum, golgi | 20.22 | 44.38 |
| PGSC0003DMT400015182 | Potato | nucleus | 41.78 | 43.79 |
| CDX88809 | Canola | nucleus | 42.05 | 42.98 |
| Bra006612.1-P | Field mustard | nucleus | 42.05 | 42.86 |
| CDX70985 | Canola | nucleus | 40.97 | 42.7 |
| VIT_06s0004g07340.t01 | Wine grape | nucleus | 31.54 | 42.24 |
| AT5G22120.1 | Thale cress | nucleus | 40.16 | 38.9 |
| VIT_06s0009g00340.t01 | Wine grape | nucleus | 34.23 | 37.46 |
| Bra006611.1-P | Field mustard | cytosol | 12.4 | 34.33 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G513800.1 | EnsemblPlantsGene:TraesCS3A01G513800 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | PANTHER:PTHR21678 | PANTHER:PTHR21678:SF0 | SEG:seg |
| SUPFAM:SSF54928 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:732877494..732880585
Molecular Weight (calculated)
39762.5 Da
IEP (calculated)
4.897
GRAVY (calculated)
-0.742
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAAAAAGGH RWTEEVDDLV DAGDVDGAIS LLESVVSSLS TAAPSPPPGA DLRLATALGD LAGLHASRGN TLQADAIRSR AIVLRLRAEK EAPQPQSLGD
101: HATAENSASP EAATGSKDSK ASASIDGKDE DEDDDWEAIA DRGDETPVRP LVQEARVTTP CSSSEKSSTS SSGTKRRGRG SFLYDKSVLY SDQCGSERDL
201: DDKGSDPAHG GSKDHADEKD NKDAAKRFGT RHALVLYDFA PSTRTTDLER IFEKFGDHGV AIRWVNDSVA LAVFRTPSSA KEAQACVPPR YKVRSLKDND
301: DLLAKIDGTD LEPPTPRPKT SARTAQRLIA HGMGLKQFTT IDAGERKEQE EARRSRITAR QAARDDAWGE D
101: HATAENSASP EAATGSKDSK ASASIDGKDE DEDDDWEAIA DRGDETPVRP LVQEARVTTP CSSSEKSSTS SSGTKRRGRG SFLYDKSVLY SDQCGSERDL
201: DDKGSDPAHG GSKDHADEKD NKDAAKRFGT RHALVLYDFA PSTRTTDLER IFEKFGDHGV AIRWVNDSVA LAVFRTPSSA KEAQACVPPR YKVRSLKDND
301: DLLAKIDGTD LEPPTPRPKT SARTAQRLIA HGMGLKQFTT IDAGERKEQE EARRSRITAR QAARDDAWGE D
001: MENTRPNEEE GRISEPNWSE RVEDLVVAGD VTAAISFLES LETNLQSRLG SSSSGERTEF GLQLSAALTQ LADLYSSEGL SLKSDELRTR SSLIKQRALD
101: CDLASSRSSG NVENQSVASS GLKSDPNVSS FDADGKTEDS KVSSSNSAAH DSSDDDWEAL ADVEPSKLLP VEELPEISKL SVEEPKVQGP KRRGRGTFTY
201: KSDAMYSDRD FSESRFDDDS EDNDLSRESE KTDESLKSKY GTRHVLVLAG FSPSLRTTEL EKLFKDFKDS GFIIRWVNDT TALAVFKTPS AALEACKHVQ
301: CSFTIRVLDD NDSLLGSISG KDLEPPSQRP KTSAKTAQRL IAHSMGLKLP ASGFGSKERD QEAARKNRIV SRQKQREDAW GDD
101: CDLASSRSSG NVENQSVASS GLKSDPNVSS FDADGKTEDS KVSSSNSAAH DSSDDDWEAL ADVEPSKLLP VEELPEISKL SVEEPKVQGP KRRGRGTFTY
201: KSDAMYSDRD FSESRFDDDS EDNDLSRESE KTDESLKSKY GTRHVLVLAG FSPSLRTTEL EKLFKDFKDS GFIIRWVNDT TALAVFKTPS AALEACKHVQ
301: CSFTIRVLDD NDSLLGSISG KDLEPPSQRP KTSAKTAQRL IAHSMGLKLP ASGFGSKERD QEAARKNRIV SRQKQREDAW GDD
Arabidopsis Description
At5g22100 [Source:UniProtKB/TrEMBL;Acc:Q9C576]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.