Factsheet for PGSC0003DMT400015182

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g074130.2.1	Tomato	nucleus	86.16	88.15
Bra002390.1-P	Field mustard	mitochondrion	12.99	62.16
VIT_06s0004g07340.t01	Wine grape	nucleus	42.66	54.51
Bra002391.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	24.86	52.07
KRG89675	Soybean	extracellular	12.99	50.55
KRG88868	Soybean	nucleus	51.69	50.0
KRH25322	Soybean	cytosol, nucleus, plastid	49.72	49.3
Os01t0965600-01	Rice	nucleus	36.44	49.05
CDX70985	Canola	nucleus	47.18	46.91
VIT_06s0009g00340.t01	Wine grape	nucleus	44.92	46.9
AT5G22120.1	Thale cress	nucleus	50.28	46.48
CDX88809	Canola	nucleus	47.18	46.01
Bra006612.1-P	Field mustard	nucleus	46.89	45.6
GSMUA_Achr10P...	Banana	cytosol	47.46	43.86
TraesCS3D01G521500.1	Wheat	nucleus	44.35	42.43
TraesCS3B01G582500.1	Wheat	cytosol, mitochondrion, nucleus	44.35	42.2
TraesCS3A01G513800.1	Wheat	nucleus	43.79	41.78
KXG34199	Sorghum	nucleus	42.66	41.26
EES19096	Sorghum	nucleus	42.09	41.05
Zm00001d037530_P002	Maize	nucleus	41.81	40.77
HORVU3Hr1G112760.2	Barley	cytosol, nucleus	44.35	40.15
Bra006611.1-P	Field mustard	cytosol	14.97	39.55

Protein Annotations

EnsemblPlants:PGSC0003DMT400015182	EnsemblPlantsGene:PGSC0003DMG400005929	EntrezGene:102595388	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	ncoils:Coil	PANTHER:PTHR21678
PANTHER:PTHR21678:SF0	PGSC:PGSC0003DMG400005929	RefSeq:XP_006361151.1	SEG:seg	SUPFAM:SSF54928	UniParc:UPI000294E336
UniProt:M1A5L1	MapMan:35.2	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400005929]

Coordinates

chr6:+:54717287..54722948

Molecular Weight (calculated)

39728.8 Da

IEP (calculated)

4.571

GRAVY (calculated)

-0.818

Length

354 amino acids

Sequence
(BLAST)

001: MDSDTNWSEK VEDLVDAGEI NEAISLLEEL VAKLEFESQN SSNSQLRLST ALLELSKLYS TQGLSLRADQ TRSKAFLIKQ QQENRNVNAT KESTGDGISG
101: SRVSQSDNKD HASLQIYTSQ NDEDDDWEAI ADRAPDELLS PQHLPEVSKI SLQDSKVQAP KRRGRGTFSY QKQSLYSDQQ SDEPAVDDIE DETVSGTPEG
201: SSDTKNLNYG TRHVLVLADF PPSTKTNDLE KLLEKFKDDV AIRWVNDTVA LAVFRTPALA LEASNSIHCP FTVRVLCEEN ELLSSIPPRD LEPPRRRPQT
301: SARTAQRLIA QSMGIKLPCT DFGSREYRRQ EEARKNRIVS RQNLKNDAWG DDDN

Best Arabidopsis Sequence Match ( AT5G22120.1 )
(BLAST)

001: MENTRPNEEE GRISEPNWSE RVEDLVVAGD VTAAISFLES LETNLQSRLG SSSSGERTEF GLQLSAALTQ LADLYSSEGL SLKSDELRTR SSLIKQRALD
101: CDLASSRSSG NVENQSVASS GLKSDPNVSS FDADGKTEDS KVSSSNSAAH DSSDDDWEAL ADVEPSKLLP VEELPEISKL SVEEPKVQGP KRRGRGTFTY
201: KSDAMYSDRD FSESRFDDDS EDNDLSRESE KTDESLKSKY GTRHVLVLAG FSPSLRTTEL EKLFKDFKDS GFIIRWVNDT TALAVFKTPS AALEACKHVQ
301: CSFTIRVLDD NDSLLGSISG KDLEPPSQRP KTSAKTAQRL IAHSMGLKLP ASGFGSKERD QEAARKNRIV SRQKQREDAW GDD

Arabidopsis Description

At5g22100 [Source:UniProtKB/TrEMBL;Acc:Q9C576]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.