Factsheet for GSMUA_Achr10P15790_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002390.1-P	Field mustard	mitochondrion	11.23	58.11
KRG89675	Soybean	extracellular	12.53	52.75
Os01t0965600-01	Rice	nucleus	34.73	50.57
Solyc06g074130.2.1	Tomato	nucleus	44.13	48.84
Zm00001d037530_P002	Maize	nucleus	46.21	48.76
KXG34199	Sorghum	nucleus	46.48	48.63
EES19096	Sorghum	nucleus	45.95	48.48
TraesCS3D01G521500.1	Wheat	nucleus	46.48	48.11
TraesCS3A01G513800.1	Wheat	nucleus	46.21	47.71
TraesCS3B01G582500.1	Wheat	cytosol, mitochondrion, nucleus	46.21	47.58
PGSC0003DMT400015182	Potato	nucleus	43.86	47.46
Bra002391.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	20.63	46.75
KRG88868	Soybean	nucleus	44.13	46.17
HORVU3Hr1G112760.2	Barley	cytosol, nucleus	47.0	46.04
KRH25322	Soybean	cytosol, nucleus, plastid	42.56	45.66
VIT_06s0004g07340.t01	Wine grape	nucleus	32.9	45.49
CDX70985	Canola	nucleus	41.25	44.38
CDX88809	Canola	nucleus	41.78	44.08
Bra006612.1-P	Field mustard	nucleus	41.25	43.41
AT5G22120.1	Thale cress	nucleus	41.25	41.25
VIT_06s0009g00340.t01	Wine grape	nucleus	34.46	38.94
Bra006611.1-P	Field mustard	cytosol	11.75	33.58

Protein Annotations

EnsemblPlants:GSMUA_Achr10P15790_001	EnsemblPlants:GSMUA_Achr10T15790_001	EnsemblPlantsGene:GSMUA_Achr10G15790_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	PANTHER:PTHR21678	PANTHER:PTHR21678:SF0
SEG:seg	SUPFAM:SSF54928	UniParc:UPI000295171A	UniProt:M0RIK4	MapMan:35.2	:

Description

growth inhibition and differentiation-related protein 88, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G15790_001]

Coordinates

chr10:+:23590921..23595727

Molecular Weight (calculated)

41621.0 Da

IEP (calculated)

4.687

GRAVY (calculated)

-0.645

Length

383 amino acids

Sequence
(BLAST)

001: MEAGGVGCGG GGGDGWSEAV EDLVDRGDVE GAISVLESVV SRLQTLDGPP SPSGDLRLAA ALGDLADLHS SRGFSLKADE LRSRGFAIRA RGSVPPLTPT
101: SGGSEPVREK ISPQEEIRVS TPSSDHEEDE DVDISISGGK CADWEAIADR GIHDESLLSS NAGDGEASSS SRKDPEVLVT PKRRGRGSFL YQKSCLYSEQ
201: VDAVTLADDN SKLDIESIEG HQRRAEDDAA SGGRNSGYGT NHVLVLYDFP PSTRTTELEK FFEKFKDGGF AIRWVNDTVA LAVFRTPAFA RDAQNITHYP
301: FKVRSLQEDD NLWNQICTKD LEPPYPRPKT SARTAQRLIA QVVGIKPSTE FGSNDLRKQE EARKNRIVTR RSLRDDAWGS DDP

Best Arabidopsis Sequence Match ( AT5G22120.1 )
(BLAST)

001: MENTRPNEEE GRISEPNWSE RVEDLVVAGD VTAAISFLES LETNLQSRLG SSSSGERTEF GLQLSAALTQ LADLYSSEGL SLKSDELRTR SSLIKQRALD
101: CDLASSRSSG NVENQSVASS GLKSDPNVSS FDADGKTEDS KVSSSNSAAH DSSDDDWEAL ADVEPSKLLP VEELPEISKL SVEEPKVQGP KRRGRGTFTY
201: KSDAMYSDRD FSESRFDDDS EDNDLSRESE KTDESLKSKY GTRHVLVLAG FSPSLRTTEL EKLFKDFKDS GFIIRWVNDT TALAVFKTPS AALEACKHVQ
301: CSFTIRVLDD NDSLLGSISG KDLEPPSQRP KTSAKTAQRL IAHSMGLKLP ASGFGSKERD QEAARKNRIV SRQKQREDAW GDD

Arabidopsis Description

At5g22100 [Source:UniProtKB/TrEMBL;Acc:Q9C576]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.