Factsheet for Zm00001d037530_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19096	Sorghum	nucleus	92.29	92.29
Os01t0965600-01	Rice	nucleus	53.44	73.76
TraesCS3A01G513800.1	Wheat	nucleus	68.59	67.12
TraesCS3B01G582500.1	Wheat	cytosol, mitochondrion, nucleus	67.77	66.13
TraesCS3D01G521500.1	Wheat	nucleus	67.22	65.95
HORVU3Hr1G112760.2	Barley	cytosol, nucleus	68.87	63.94
Bra002390.1-P	Field mustard	mitochondrion	11.29	55.41
KRG89675	Soybean	extracellular	11.85	47.25
GSMUA_Achr10P...	Banana	cytosol	48.76	46.21
Bra002391.1-P	Field mustard	cytosol, endoplasmic reticulum, golgi	20.66	44.38
KRH25322	Soybean	cytosol, nucleus, plastid	43.53	44.26
KRG88868	Soybean	nucleus	44.35	43.99
Solyc06g074130.2.1	Tomato	nucleus	41.05	43.06
CDX70985	Canola	nucleus	41.87	42.7
CDX88809	Canola	nucleus	42.15	42.15
PGSC0003DMT400015182	Potato	nucleus	40.77	41.81
Bra006612.1-P	Field mustard	nucleus	41.87	41.76
VIT_06s0004g07340.t01	Wine grape	nucleus	31.41	41.16
AT5G22120.1	Thale cress	nucleus	40.22	38.12
VIT_06s0009g00340.t01	Wine grape	nucleus	33.33	35.69
Bra006611.1-P	Field mustard	cytosol	12.4	33.58

Protein Annotations

EMBL:BT087585	EMBL:EU965605	EnsemblPlants:Zm00001d037530_P002	EnsemblPlants:Zm00001d037530_T002	EnsemblPlantsGene:Zm00001d037530	EntrezGene:100283709
Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:RBD_domain_sf	PANTHER:PTHR21678	PANTHER:PTHR21678:SF0	ProteinID:AQK84213.1	ProteinID:AQK84214.1	SEG:seg
SUPFAM:SSF54928	UniParc:UPI000182DF2F	UniProt:B6TKU0	MapMan:35.2	:	:

Description

Growth inhibition and differentiation-related protein 88-like protein

Coordinates

chr6:-:128240525..128243297

Molecular Weight (calculated)

39377.4 Da

IEP (calculated)

4.809

GRAVY (calculated)

-0.728

Length

363 amino acids

Sequence
(BLAST)

001: MDGPRWTEEV DDLVDAGDVD GAIALLESVV SDLSTSAAPP ATDLRLATAL GDLAGLHASR GDTLRADELR ARAIALRSRA TVPGTGTLGD QELSEKCPSQ
101: ECATGSKDSE VSANTNKSNE DEEDDWEAIA DSGALDDTLV RSLEQGARVS SCSSPEKSST PSSGPKRRGR GSFLYNKSVL YSDQCGSERE LDNKQSKPQV
201: GSKDHVNEPE NNAVTAATQF GTRHVLVFYD FPPSTRTTDL ERIFEKFGDH GVAIRWINDT SALAVFRTPS AANEAQACIP PRYKVRSLKP DDDLLTKIDG
301: RDLDPPKPRP KTSARTAQRL IAHGMGLKQF TNFGSDELKK QEGERKDRIA ARQAMRDEAW GSD

Best Arabidopsis Sequence Match ( AT5G22120.1 )
(BLAST)

001: MENTRPNEEE GRISEPNWSE RVEDLVVAGD VTAAISFLES LETNLQSRLG SSSSGERTEF GLQLSAALTQ LADLYSSEGL SLKSDELRTR SSLIKQRALD
101: CDLASSRSSG NVENQSVASS GLKSDPNVSS FDADGKTEDS KVSSSNSAAH DSSDDDWEAL ADVEPSKLLP VEELPEISKL SVEEPKVQGP KRRGRGTFTY
201: KSDAMYSDRD FSESRFDDDS EDNDLSRESE KTDESLKSKY GTRHVLVLAG FSPSLRTTEL EKLFKDFKDS GFIIRWVNDT TALAVFKTPS AALEACKHVQ
301: CSFTIRVLDD NDSLLGSISG KDLEPPSQRP KTSAKTAQRL IAHSMGLKLP ASGFGSKERD QEAARKNRIV SRQKQREDAW GDD

Arabidopsis Description

At5g22100 [Source:UniProtKB/TrEMBL;Acc:Q9C576]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.