Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d049723_P001 | Maize | extracellular | 77.71 | 84.47 |
| VIT_16s0013g00610.t01 | Wine grape | nucleus | 68.57 | 79.47 |
| KRH48832 | Soybean | nucleus | 67.43 | 78.15 |
| CDX90077 | Canola | nucleus | 65.71 | 77.7 |
| KRH11252 | Soybean | nucleus | 66.86 | 77.48 |
| CDY38056 | Canola | nucleus | 65.71 | 76.67 |
| Solyc03g093680.2.1 | Tomato | nucleus | 65.14 | 75.5 |
| AT1G02140.1 | Thale cress | nucleus | 62.86 | 73.33 |
| CDY15128 | Canola | nucleus | 65.14 | 73.08 |
| GSMUA_Achr11P... | Banana | nucleus | 43.43 | 73.08 |
| GSMUA_Achr11P... | Banana | nucleus | 42.86 | 72.12 |
| Bra033217.1-P | Field mustard | nucleus | 41.71 | 71.57 |
| KRH66476 | Soybean | nucleus | 66.29 | 59.49 |
| GSMUA_Achr11P... | Banana | mitochondrion | 36.57 | 51.2 |
| PGSC0003DMT400054151 | Potato | nucleus | 64.0 | 49.56 |
| Bra032668.1-P | Field mustard | cytosol | 65.14 | 42.86 |
Protein Annotations
| EnsemblPlants:Zm00001d035019_P001 | EnsemblPlants:Zm00001d035019_T001 | EnsemblPlantsGene:Zm00001d035019 | Gene3D:3.30.1560.10 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:IPR036605 | InterPro:Mago_nashi | InterPro:Mago_nashi_sf | PANTHER:PTHR12638 |
| PFAM:PF02792 | ProteinID:AQK78100.1 | SEG:seg | SUPFAM:SSF89817 | UniParc:UPI000843B9BA | UniProt:A0A1D6LDM1 |
| MapMan:17.3.1.1.2 | : | : | : | : | : |
Description
Protein mago nashi homolog
Coordinates
chr6:+:1974388..1978132
Molecular Weight (calculated)
19719.2 Da
IEP (calculated)
6.362
GRAVY (calculated)
-0.507
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAAGGEN SGAGAGAGEG EFYLRYYVGH KGKFGHEFLE FEFRPDGKLR YANNSNYKND TMIRKEVFVS PSVLREARRI IQESDIMKED DSNWPEPDRI
101: GRQELEIVMG NEHISFTTSK IGSLVDVQSS KDPEGLRIFY YLVQVRPHPQ IPTLFVHRQI TSTYDALITS TRAIG
101: GRQELEIVMG NEHISFTTSK IGSLVDVQSS KDPEGLRIFY YLVQVRPHPQ IPTLFVHRQI TSTYDALITS TRAIG
001: MAAEEATEFY LRYYVGHKGK FGHEFLEFEF REDGKLRYAN NSNYKNDTII RKEVFLTPAV LKECKRIVSE SEILKEDDNN WPEPDRVGKQ ELEIVLGNEH
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI
Arabidopsis Description
MEE63MEE63 [Source:UniProtKB/TrEMBL;Acc:A0A178WA48]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.