CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 27291164

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88868
KRG89675
KRH23958
KRH25322
KRH39841
KRH56371
KRH62568

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02140.1	KRH23958	AT4G25200.1	21798944
AT1G02140.1	KRH39841	AT4G25200.1	21798944
AT1G02140.1	KRG88868	AT5G22120.1	21798944
AT1G02140.1	KRG89675	AT5G22120.1	21798944
AT1G02140.1	KRH25322	AT5G22120.1	21798944
AT1G02140.1	KRH56371	AT5G56290.1	21798944
AT1G02140.1	KRH62568	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48832	Soybean	nucleus	68.21	88.08
KRH11252	Soybean	nucleus	67.18	86.75
VIT_16s0013g00610.t01	Wine grape	nucleus	62.05	80.13
Solyc03g093680.2.1	Tomato	nucleus	61.54	79.47
CDX90077	Canola	nucleus	60.0	79.05
CDY38056	Canola	nucleus	60.0	78.0
AT1G02140.1	Thale cress	nucleus	58.97	76.67
CDY15128	Canola	nucleus	60.0	75.0
Os12t0287200-01	Rice	nucleus	61.54	75.0
EES13219	Sorghum	nucleus	60.51	74.21
Zm00001d049723_P001	Maize	extracellular	61.03	73.91
Bra033217.1-P	Field mustard	nucleus	38.46	73.53
GSMUA_Achr11P...	Banana	nucleus	38.97	73.08
GSMUA_Achr11P...	Banana	nucleus	38.46	72.12
TraesCS7A01G323400.1	Wheat	nucleus	60.0	71.78
TraesCS7B01G224300.1	Wheat	nucleus	60.0	71.78
TraesCS7D01G320000.1	Wheat	nucleus	60.0	71.78
HORVU7Hr1G077420.4	Barley	nucleus	60.0	71.34
Os08t0107900-01	Rice	nucleus	59.49	71.17
EER99060	Sorghum	nucleus	55.38	67.92
Zm00001d035019_P001	Maize	nucleus	59.49	66.29
GSMUA_Achr11P...	Banana	mitochondrion	35.38	55.2
PGSC0003DMT400054151	Potato	nucleus	62.05	53.54
Bra032668.1-P	Field mustard	cytosol	60.51	44.36

Protein Annotations

EntrezGene:100499908	MapMan:17.3.1.1.2	Gene3D:3.30.1560.10	EMBL:ACUP02001970	EnsemblPlantsGene:GLYMA_03G109200	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008380	GO:GO:0009987	GO:GO:0035145	UniProt:I1JMP2	InterPro:IPR036605	EnsemblPlants:KRH66476
ProteinID:KRH66476	ProteinID:KRH66476.1	InterPro:Mago_nashi	InterPro:Mago_nashi_sf	PFAM:PF02792	PANTHER:PTHR12638
SUPFAM:SSF89817	UniParc:UPI00023C18F6	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:31071538..31074567

Molecular Weight (calculated)

22613.9 Da

IEP (calculated)

4.965

GRAVY (calculated)

-0.349

Length

195 amino acids

Sequence
(BLAST)

001: MGSEEQNGEF YLRYYVGHKG KFGHEFLEFE FRPDGKLRYA NNSNYKNDTI IRKEVYLTPA VLRECRRIIA ESEIMKEDDN NWPEPDRVGR QELEIVMGNE
101: HISFTTSKIG SLVDVQSSAD PEGLRIFYYL VQEIVNKCGH NCSCRDPENF FVAAKLWLCC GCGDLVISKT LRFEVLCLLS YFTSLQDQAY LMCLQ

Best Arabidopsis Sequence Match ( AT1G02140.1 )
(BLAST)

001: MAAEEATEFY LRYYVGHKGK FGHEFLEFEF REDGKLRYAN NSNYKNDTII RKEVFLTPAV LKECKRIVSE SEILKEDDNN WPEPDRVGKQ ELEIVLGNEH
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI

Arabidopsis Description

MEE63MEE63 [Source:UniProtKB/TrEMBL;Acc:A0A178WA48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.