CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94262
KRH03036
KRH57695
KRH66641
KRH72318

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56290.1	KRG94262	AT3G01910.1	21798944
AT5G56290.1	KRH57695	AT3G01910.1	21798944
AT5G56290.1	KRH66641	AT5G43280.1	24879895
AT5G56290.1	KRH03036	AT5G57910.1	21798944
AT5G56290.1	KRH72318	AT5G57910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56371	Soybean	plastid	96.88	97.15
VIT_19s0015g01940.t01	Wine grape	plastid	73.44	73.64
PGSC0003DMT400029209	Potato	cytosol, plastid	71.82	71.24
Solyc10g005650.2.1	Tomato	plastid	71.14	70.56
AT5G56290.1	Thale cress	plastid	69.11	70.05
Bra028938.1-P	Field mustard	plastid	68.02	68.77
GSMUA_Achr7P20310_001	Banana	plastid	68.43	66.62
Bra002826.1-P	Field mustard	plastid	64.91	62.86
EES15431	Sorghum	plastid	60.84	61.17
Os08t0500100-02	Rice	cytosol	60.84	61.01
Zm00001d031327_P009	Maize	plastid	60.43	60.27
TraesCS7A01G241500.5	Wheat	cytosol, plastid	60.3	59.49
TraesCS7B01G137000.2	Wheat	cytosol, plastid	60.16	59.36
HORVU7Hr1G049220.10	Barley	plastid	60.03	59.22
TraesCS7D01G240500.3	Wheat	cytosol, plastid	60.03	59.15
CDY69423	Canola	plastid	34.28	58.29
Zm00001d052851_P002	Maize	plastid	58.4	56.05
TraesCS6A01G105000.1	Wheat	plastid	51.35	53.46
Bra035613.1-P	Field mustard	extracellular, mitochondrion	5.42	33.9

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100789878	MapMan:23.4.1.1.1	EMBL:ACUP02002310	ncoils:Coil	EnsemblPlantsGene:GLYMA_04G116700
GO:GO:0003674	GO:GO:0005052	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0005778	GO:GO:0005829	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0016560	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	UniProt:K7KJI6	EnsemblPlants:KRH62568	ProteinID:KRH62568	ProteinID:KRH62568.1
ProteinID:KRH62569.1	ProteinID:KRH62570.1	ProteinID:KRH62571.1	PFAM:PF00515	PFAM:PF13432	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR10130	PANTHER:PTHR10130:SF0	InterPro:PTS1R_family	SMART:SM00028	SUPFAM:SSF48452
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI000233A3C2	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:13564336..13589776

Molecular Weight (calculated)

82237.4 Da

IEP (calculated)

4.412

GRAVY (calculated)

-0.563

Length

738 amino acids

Sequence
(BLAST)

001: MAMRDLVSGA AACGDSSSSS SANPLASLAN ALIGSSSKTP ERLKEIPTST PTDPTSQFYS TALPANQLPG TELDKPLLNA NSQASEFLHR FRGTTGLEET
101: WDEIQRDGAA AQMRQLPPGI QQLPLDGTPQ RVLSSFLHSF LDSSRGGVPF HPAPLPMLGL SDGDKQCIRD RSSIMARHLF ADKGEEFIDA QVNALLCSLD
201: IDSSVRGKGP MPERFRELED YWNESQGNLR LGPPAPDGWI SEFSQHREKY DNPDSWANSF EQQYGANGWV SEFEHSQLSS VDQMRGMNMP NFAAMEQTRM
301: LANTLAQNGD PKFQNSKFLQ FVSKMSRGEL IIDDNQVKEN ALPASGDWAT EYNQQYNHGH AWAGEFLNDK VYHGPDQWVN EFTSEGQQHD AVDDQWVNEF
401: SKLNVNDWAD EFGQQFGEGA LGDNSTSDSW AQAYDEFLNE QVAAKQQLDS SRGVYVFSDL NPYVGHPNPL KEGQDLFRKG LLSEAVLALE AEVLKNPENA
501: EGWRLLGIAH AENDDDQQAI AAMMRAQEAD PTNLEVLLAL GVSHTNELEQ TAALKYLYGW LRHHPKYGTL APPEMADSLY YADVARLFND AAELSPDDAD
601: VHIVLGVMYN LSREYDKAIA SFERALKLKP QDYSLWNKLG ATQANSVQSA DAIMAYQQAL DLKPNYVRAW ANMGISYANQ GMYDESVRYY VRALAMNPKA
701: ENAWQYLRIS LSCASRNDML EACDSRNLDL LQKEFPLQ

Best Arabidopsis Sequence Match ( AT5G56290.1 )
(BLAST)

001: MAMRDLVNGG AACAVPGSSS SSNPLGALTN ALLGSSSKTQ ERLKEIPNAN RSGPRPQFYS EDQQIRSLPG SELDQPLLQP GAQGSEFFRG FRSVDQNGLG
101: AAWDEVQQGG PMPPMGPMFE PVQPTFEGPP QRVLSNFLHS FVESSRGGIP FRPAPVPVLG LSQSDKQCIR DRSSIMARHF FADRGEEFIN SQVNALLSSL
201: DIDDGIQARG HVPGRFRELD DYWNESQAVV KPNLHPADNW AAEFNQHGMD HGGPDSWVQS FEQQHGVNGW ATEFEQGQSQ LMSSQMRSMD MQNIAAMEQT
301: RKLAHTLSQD GNPKFQNSRF LQFVSKMSRG ELIIDENQVK QASAPGEWAT EYEQQYLGPP SWADQFANEK LSHGPEQWAD EFASGRGQQE TAEDQWVNEF
401: SKLNVDDWID EFAEGPVGDS SADAWANAYD EFLNEKNAGK QTSGVYVFSD MNPYVGHPEP MKEGQELFRK GLLSEAALAL EAEVMKNPEN AEGWRLLGVT
501: HAENDDDQQA IAAMMRAQEA DPTNLEVLLA LGVSHTNELE QATALKYLYG WLRNHPKYGA IAPPELADSL YHADIARLFN EASQLNPEDA DVHIVLGVLY
601: NLSREFDRAI TSFQTALQLK PNDYSLWNKL GATQANSVQS ADAISAYQQA LDLKPNYVRA WANMGISYAN QGMYKESIPY YVRALAMNPK ADNAWQYLRL
701: SLSCASRQDM IEACESRNLD LLQKEFPL

Arabidopsis Description

PEX5Peroxisome biogenesis protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMA3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.