Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH72318 | Soybean | cytosol | 91.05 | 90.35 |
| VIT_11s0037g00390.t01 | Wine grape | nucleus | 45.91 | 50.0 |
| Bra002685.1-P | Field mustard | nucleus | 32.68 | 43.3 |
| CDY51271 | Canola | nucleus | 31.91 | 42.27 |
| CDY32739 | Canola | nucleus | 31.52 | 41.97 |
| CDY57462 | Canola | nucleus | 31.91 | 40.8 |
| CDY02778 | Canola | nucleus | 30.74 | 40.51 |
| Bra020404.1-P | Field mustard | nucleus | 31.91 | 40.2 |
| AT5G57910.1 | Thale cress | nucleus | 31.52 | 39.13 |
| CDX88648 | Canola | nucleus | 31.91 | 38.68 |
| CDY11841 | Canola | nucleus | 31.91 | 38.5 |
| Bra006793.1-P | Field mustard | mitochondrion, nucleus | 24.12 | 37.8 |
| CDY39225 | Canola | nucleus | 29.18 | 37.5 |
| Bra024058.1-P | Field mustard | nucleus | 29.57 | 37.44 |
| CDY28197 | Canola | nucleus | 29.18 | 36.23 |
| Bra011204.1-P | Field mustard | nucleus | 29.18 | 36.23 |
| CDX68674 | Canola | nucleus | 29.18 | 36.06 |
| PGSC0003DMT400020258 | Potato | nucleus | 39.3 | 34.24 |
| PGSC0003DMT400028944 | Potato | cytosol | 39.69 | 34.0 |
| Solyc07g005690.2.1 | Tomato | cytosol | 38.91 | 33.56 |
| Solyc12g009970.1.1 | Tomato | nucleus | 38.13 | 33.11 |
| AT4G30630.1 | Thale cress | nucleus | 29.57 | 32.07 |
| Bra041159.1-P | Field mustard | cytosol | 16.34 | 32.06 |
Protein Annotations
| EMBL:ACUP02010334 | EnsemblPlants:KRH03036 | EnsemblPlantsGene:GLYMA_17G073100 | EntrezGene:100782706 | ncoils:Coil | PANTHER:PTHR34807 |
| PANTHER:PTHR34807:SF3 | ProteinID:KRH03036 | ProteinID:KRH03036.1 | SEG:seg | UniParc:UPI0001BA5C39 | UniProt:I1MT15 |
| MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr17:-:5713375..5716679
Molecular Weight (calculated)
29633.5 Da
IEP (calculated)
10.672
GRAVY (calculated)
-1.012
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKMKGVVSL DPPYEVYQDQ RARLRHQSLL QDYEDLHKET EAMRRKLQAT RQKKLMLEDE VRFLRQRYNY LLKHPILKPH PKQVVKPQKL KLQAPIISKG
101: KNYSRKEPTL RPHPTSHLNS NGRISNVAEA PLKKTGHLFD LNLNARSSSK KDASFNGSAP PVFELNHKER IHSSKEATKK SVTPFFDLNQ ISREEEELQG
201: NSEAMRIEEP KRSTQRVATD EQHSDIKLSA ACRSVGDGSN RAGKRKISWQ DQVALRV
101: KNYSRKEPTL RPHPTSHLNS NGRISNVAEA PLKKTGHLFD LNLNARSSSK KDASFNGSAP PVFELNHKER IHSSKEATKK SVTPFFDLNQ ISREEEELQG
201: NSEAMRIEEP KRSTQRVATD EQHSDIKLSA ACRSVGDGSN RAGKRKISWQ DQVALRV
001: MNPTHGDFTP LNSNHFEDPK VRFRHHSLMQ DYGELHMETE AMRKRLQAVR ERKATLMAEV RFLRRRYRHL RQDQPQEIKK VRRSNGGKKI RVEVSPSNKS
101: EAETKHVSLP DLNHSEKAHD ETKTSPKRRV PLFDLNQISG EEEQETEAVD NNQENTRVEE SNSCKRLMIS SIEMQQKDVK PSSCRNGGNG SNKRKISWQD
201: PVAALRV
101: EAETKHVSLP DLNHSEKAHD ETKTSPKRRV PLFDLNQISG EEEQETEAVD NNQENTRVEE SNSCKRLMIS SIEMQQKDVK PSSCRNGGNG SNKRKISWQD
201: PVAALRV
Arabidopsis Description
At5g57910 [Source:UniProtKB/TrEMBL;Acc:Q8GW24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.