Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH66324 | Soybean | cytosol | 33.06 | 76.83 |
| VIT_18s0122g00110.t01 | Wine grape | nucleus | 52.05 | 48.66 |
| CDX74860 | Canola | nucleus | 41.8 | 43.78 |
| Bra005056.1-P | Field mustard | nucleus | 42.35 | 43.06 |
| CDY44635 | Canola | nucleus | 42.62 | 42.98 |
| PGSC0003DMT400065934 | Potato | nucleus | 44.95 | 42.29 |
| AT5G25070.1 | Thale cress | cytosol | 42.08 | 41.85 |
| HORVU7Hr1G051520.12 | Barley | cytosol, mitochondrion, nucleus, plastid | 33.61 | 36.99 |
| GSMUA_Achr1P27870_001 | Banana | nucleus | 38.52 | 36.77 |
| TraesCS7B01G141000.1 | Wheat | nucleus | 39.48 | 36.49 |
| Zm00001d049744_P001 | Maize | nucleus | 37.98 | 35.87 |
| TraesCS7D01G248900.1 | Wheat | nucleus | 38.93 | 35.85 |
| EES14249 | Sorghum | nucleus | 38.39 | 35.84 |
| TraesCS7A01G250200.1 | Wheat | nucleus | 38.93 | 35.71 |
| Zm00001d031489_P002 | Maize | nucleus | 38.93 | 35.23 |
| GSMUA_Achr9P20030_001 | Banana | nucleus | 37.84 | 34.8 |
Protein Annotations
| EMBL:ACUP02000686 | EnsemblPlants:KRH77981 | EnsemblPlantsGene:GLYMA_01G245400 | EntrezGene:100527238 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR001943 | InterPro:UVR_dom | ncoils:Coil | PANTHER:PTHR38394 | PFAM:PF02151 |
| ProteinID:KRH77981 | ProteinID:KRH77981.1 | SEG:seg | UniParc:UPI00023BE8EB | UniProt:I1JB16 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr1:-:56776663..56780955
Molecular Weight (calculated)
82283.8 Da
IEP (calculated)
4.583
GRAVY (calculated)
-0.620
Length
732 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLEGKKGED MDSLFEGMVL FNPAEEKDNG SDDSLTISSC SQSQPLDENL FSDLTLVVDP LQNLEVAEAE RDLQSRQGHA PARRRKRSGL RIGYGRDAFS
101: SNDPPHTPSP LPQPISDSDS VGDADAVRVR DTDTDTDTET LPSITTATAT ATDDPVTVTL TQPSNESENQ NRKHQQSSTE SSSAEFRQLK SSIHDKLNHA
201: TQLVKSASSA RKDSIRNRRK TVENANLASL KHMELEKQLE EACEAEDFER AEKVSDDLSA AEKEKQAFAN SLREADAFVD ALDLKLQHAL DSQLAIEEQC
301: AILLDHYATN ALNNADFSMK KASSVYSKEM DQWLSSSEAL EVKKMELEIE SQFMNEARLE LNNTIEHSIQ NDKREKEILC KRKDVLMGEL EQLLALVKQK
401: EMEIADNDSN LEAVENKINK VVSGFKEMQS SIDVKYDKLQ SVLAQVKLET ETLVLKKEEI DNFLIREEEM GARLREFVRI STEEAEGYRK IVKLRRSLMS
501: SILKSREDKL TLSKKEEKLS GDVKLFQQEV SAARASLQEL SSRKSSIQQD IASFKQRIVF IDKRVPELEA EKKVATTARN FKEAARIATE AKSLCVEKES
601: IQINMDMATL NLEKLEEEIN DTLNKLQETE GMILLKEKEL AMVRYQKLLL AAATARAEKA AAVEMGDVEE ANLLLAEAEA ADCDAEKLKS TYKFEAEDFT
701: DLQRHLISMD LVSHLDQKQL EELAVSLRLF TG
101: SNDPPHTPSP LPQPISDSDS VGDADAVRVR DTDTDTDTET LPSITTATAT ATDDPVTVTL TQPSNESENQ NRKHQQSSTE SSSAEFRQLK SSIHDKLNHA
201: TQLVKSASSA RKDSIRNRRK TVENANLASL KHMELEKQLE EACEAEDFER AEKVSDDLSA AEKEKQAFAN SLREADAFVD ALDLKLQHAL DSQLAIEEQC
301: AILLDHYATN ALNNADFSMK KASSVYSKEM DQWLSSSEAL EVKKMELEIE SQFMNEARLE LNNTIEHSIQ NDKREKEILC KRKDVLMGEL EQLLALVKQK
401: EMEIADNDSN LEAVENKINK VVSGFKEMQS SIDVKYDKLQ SVLAQVKLET ETLVLKKEEI DNFLIREEEM GARLREFVRI STEEAEGYRK IVKLRRSLMS
501: SILKSREDKL TLSKKEEKLS GDVKLFQQEV SAARASLQEL SSRKSSIQQD IASFKQRIVF IDKRVPELEA EKKVATTARN FKEAARIATE AKSLCVEKES
601: IQINMDMATL NLEKLEEEIN DTLNKLQETE GMILLKEKEL AMVRYQKLLL AAATARAEKA AAVEMGDVEE ANLLLAEAEA ADCDAEKLKS TYKFEAEDFT
701: DLQRHLISMD LVSHLDQKQL EELAVSLRLF TG
001: MDGGDDMDSL FEGMELFTPA SQFSGDSKVS SPPQSEETKA AEATLITAPS QPDVTEATLI TATSQPDITE ALDENLFSDL TIVTPVQHQP EPMEAVITTH
101: QSPAKNYGRQ VSRRKKRAAG LRIGYGRHET NNLDEDEDDA VSQQSDSVSQ VSDSVSQISD SVAQVFDSGN QSLDSPVVTV VVGNGSSRLE LVKAQIEAKL
201: NRSRDLAASV TSARKNAIRK KRQASENLRL ASTTHEELEK QLEEAIETED FDAAERISES LAAKERDRLA LLALLRQAES DCDAIESKME EVLLSQIAAE
301: EESACLLRSF GTDAENDAGS ILEKAEAFYS DEMEKWHSCS EDVEVRKVEL DIESVVVDNV RLSLNGILEG SVEQDMKEKE ILQKKKEHLA NELEELLALV
401: KAKEKEIDEN DSQIEAVEER INNVVTGFKE LQTSMDKMLN DVQAGLTEVD KETEDLSRKK KDVDEFMTSE KERGAKLRDL ARVSADEACE YEEVIKLRKG
501: LMSYVSKTRE ERAKLVNIEE KLSEEVQKLQ EEVSSTRELL KERSSKKSII QQNITSFMDK IMFIEKRMPE LEAEKKVAAS TRNFKEAGRI AAEAKSLNLE
601: KDKTQMETGK ANAELEKAEH EIEETIKRLQ EIEKLILSKE KELAISRFQR LRIDSGTAKA ERSAALELSD LEEANLLLEE AQEAESEAEK LKLTGGLKEE
701: EEEEEKAKSN EVFVSMELIA TVGLKKLQEL VESVPS
101: QSPAKNYGRQ VSRRKKRAAG LRIGYGRHET NNLDEDEDDA VSQQSDSVSQ VSDSVSQISD SVAQVFDSGN QSLDSPVVTV VVGNGSSRLE LVKAQIEAKL
201: NRSRDLAASV TSARKNAIRK KRQASENLRL ASTTHEELEK QLEEAIETED FDAAERISES LAAKERDRLA LLALLRQAES DCDAIESKME EVLLSQIAAE
301: EESACLLRSF GTDAENDAGS ILEKAEAFYS DEMEKWHSCS EDVEVRKVEL DIESVVVDNV RLSLNGILEG SVEQDMKEKE ILQKKKEHLA NELEELLALV
401: KAKEKEIDEN DSQIEAVEER INNVVTGFKE LQTSMDKMLN DVQAGLTEVD KETEDLSRKK KDVDEFMTSE KERGAKLRDL ARVSADEACE YEEVIKLRKG
501: LMSYVSKTRE ERAKLVNIEE KLSEEVQKLQ EEVSSTRELL KERSSKKSII QQNITSFMDK IMFIEKRMPE LEAEKKVAAS TRNFKEAGRI AAEAKSLNLE
601: KDKTQMETGK ANAELEKAEH EIEETIKRLQ EIEKLILSKE KELAISRFQR LRIDSGTAKA ERSAALELSD LEEANLLLEE AQEAESEAEK LKLTGGLKEE
701: EEEEEKAKSN EVFVSMELIA TVGLKKLQEL VESVPS
Arabidopsis Description
Neurofilament light protein [Source:UniProtKB/TrEMBL;Acc:Q8L4Q6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.