Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G250200.1 | Wheat | nucleus | 93.21 | 92.86 |
| TraesCS7B01G141000.1 | Wheat | nucleus | 90.82 | 91.16 |
| HORVU7Hr1G051520.12 | Barley | cytosol, mitochondrion, nucleus, plastid | 73.96 | 88.42 |
| EES14249 | Sorghum | nucleus | 68.55 | 69.52 |
| Zm00001d049744_P001 | Maize | nucleus | 66.79 | 68.52 |
| Zm00001d031489_P002 | Maize | nucleus | 66.54 | 65.39 |
| GSMUA_Achr1P27870_001 | Banana | nucleus | 44.53 | 46.15 |
| GSMUA_Achr9P20030_001 | Banana | nucleus | 41.89 | 41.83 |
| KRH66324 | Soybean | cytosol | 16.1 | 40.63 |
| VIT_18s0122g00110.t01 | Wine grape | nucleus | 38.49 | 39.08 |
| KRH77981 | Soybean | nucleus | 35.85 | 38.93 |
| CDX74860 | Canola | nucleus | 32.33 | 36.77 |
| PGSC0003DMT400065934 | Potato | nucleus | 35.97 | 36.76 |
| Bra005056.1-P | Field mustard | nucleus | 32.45 | 35.83 |
| CDY44635 | Canola | nucleus | 32.7 | 35.81 |
| AT5G25070.1 | Thale cress | cytosol | 33.08 | 35.73 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G248900.1 | EnsemblPlantsGene:TraesCS7D01G248900 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | InterPro:IPR001943 | InterPro:UVR_dom |
| ncoils:Coil | PANTHER:PTHR38394 | PFAM:PF02151 | PFscan:PS50151 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr7D:-:220287022..220290203
Molecular Weight (calculated)
86233.5 Da
IEP (calculated)
4.299
GRAVY (calculated)
-0.527
Length
795 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQDGGWGD GGDSLFEGMV LFAPADPAAA EAEEAPEPPK PPTPPPAAAA ASDAESSATS QPLDEDLFSD LTLLAPQPPL DQDQHPQPQA QDQNHRPASP
101: VAVTPPPAAA ALSRQPSSSS LRKKKRAVRI GYGRSPQTAP ALPPTVPIAN TAAPAAAAAT ATVLRTTSSS SSLSDASTYD AIPPIPIQYL DQLGNDDERD
201: AAVVDPDANS LDAISVNSLD AKQEAKEEDG GKDAGEAVVA VVGIEERLAL LRSQISSKLD SIQQSAAAVA AKRRQLAGRQ RKVAEDVGSA ASRHKDLERE
301: LEEACEAEDF ERAERISDSL AALEKDKDRL LTALRDAELD YDSVDLELQD VLESRIAVEE EAAALLEQFA KDATEHADSV SKQAEEMSSK EIEGWQTSME
401: LLQIKKLETE VETELVLAAR SGLEGSVEHL IEDDKREKDI LSKKGETLAV ELAELLELVR LKEAEIAENN AQMQEVQERI GAVVSRFHGS QSDIDMKINS
501: LQESQTKIDQ DTEALALKKN EIDNCISSAE QKDSDLREII NACSAEAKAC QQSVEIRRKL ASSILKSRQD RIGLLKMEEE ISQDIQMLRQ QTTDARTSLQ
601: EISSKRACIQ QEMATCKQKL SFIDKRGPEL EAEKKVAAAA RNFKEAGRIA AEAKTLNSEK EELRAKLEKA GTDLEVIEKD IAATTDKIQE CEGLIVLKEQ
701: ESAMASYKRL RLDSSAARAE LTAATETDDG EEVEILRKEA EAAESKALEL KTLYNLQPDS DEYIFQPVVP IAFITNSTWQ HLAEMASSFG LSPET
101: VAVTPPPAAA ALSRQPSSSS LRKKKRAVRI GYGRSPQTAP ALPPTVPIAN TAAPAAAAAT ATVLRTTSSS SSLSDASTYD AIPPIPIQYL DQLGNDDERD
201: AAVVDPDANS LDAISVNSLD AKQEAKEEDG GKDAGEAVVA VVGIEERLAL LRSQISSKLD SIQQSAAAVA AKRRQLAGRQ RKVAEDVGSA ASRHKDLERE
301: LEEACEAEDF ERAERISDSL AALEKDKDRL LTALRDAELD YDSVDLELQD VLESRIAVEE EAAALLEQFA KDATEHADSV SKQAEEMSSK EIEGWQTSME
401: LLQIKKLETE VETELVLAAR SGLEGSVEHL IEDDKREKDI LSKKGETLAV ELAELLELVR LKEAEIAENN AQMQEVQERI GAVVSRFHGS QSDIDMKINS
501: LQESQTKIDQ DTEALALKKN EIDNCISSAE QKDSDLREII NACSAEAKAC QQSVEIRRKL ASSILKSRQD RIGLLKMEEE ISQDIQMLRQ QTTDARTSLQ
601: EISSKRACIQ QEMATCKQKL SFIDKRGPEL EAEKKVAAAA RNFKEAGRIA AEAKTLNSEK EELRAKLEKA GTDLEVIEKD IAATTDKIQE CEGLIVLKEQ
701: ESAMASYKRL RLDSSAARAE LTAATETDDG EEVEILRKEA EAAESKALEL KTLYNLQPDS DEYIFQPVVP IAFITNSTWQ HLAEMASSFG LSPET
001: MDGGDDMDSL FEGMELFTPA SQFSGDSKVS SPPQSEETKA AEATLITAPS QPDVTEATLI TATSQPDITE ALDENLFSDL TIVTPVQHQP EPMEAVITTH
101: QSPAKNYGRQ VSRRKKRAAG LRIGYGRHET NNLDEDEDDA VSQQSDSVSQ VSDSVSQISD SVAQVFDSGN QSLDSPVVTV VVGNGSSRLE LVKAQIEAKL
201: NRSRDLAASV TSARKNAIRK KRQASENLRL ASTTHEELEK QLEEAIETED FDAAERISES LAAKERDRLA LLALLRQAES DCDAIESKME EVLLSQIAAE
301: EESACLLRSF GTDAENDAGS ILEKAEAFYS DEMEKWHSCS EDVEVRKVEL DIESVVVDNV RLSLNGILEG SVEQDMKEKE ILQKKKEHLA NELEELLALV
401: KAKEKEIDEN DSQIEAVEER INNVVTGFKE LQTSMDKMLN DVQAGLTEVD KETEDLSRKK KDVDEFMTSE KERGAKLRDL ARVSADEACE YEEVIKLRKG
501: LMSYVSKTRE ERAKLVNIEE KLSEEVQKLQ EEVSSTRELL KERSSKKSII QQNITSFMDK IMFIEKRMPE LEAEKKVAAS TRNFKEAGRI AAEAKSLNLE
601: KDKTQMETGK ANAELEKAEH EIEETIKRLQ EIEKLILSKE KELAISRFQR LRIDSGTAKA ERSAALELSD LEEANLLLEE AQEAESEAEK LKLTGGLKEE
701: EEEEEKAKSN EVFVSMELIA TVGLKKLQEL VESVPS
101: QSPAKNYGRQ VSRRKKRAAG LRIGYGRHET NNLDEDEDDA VSQQSDSVSQ VSDSVSQISD SVAQVFDSGN QSLDSPVVTV VVGNGSSRLE LVKAQIEAKL
201: NRSRDLAASV TSARKNAIRK KRQASENLRL ASTTHEELEK QLEEAIETED FDAAERISES LAAKERDRLA LLALLRQAES DCDAIESKME EVLLSQIAAE
301: EESACLLRSF GTDAENDAGS ILEKAEAFYS DEMEKWHSCS EDVEVRKVEL DIESVVVDNV RLSLNGILEG SVEQDMKEKE ILQKKKEHLA NELEELLALV
401: KAKEKEIDEN DSQIEAVEER INNVVTGFKE LQTSMDKMLN DVQAGLTEVD KETEDLSRKK KDVDEFMTSE KERGAKLRDL ARVSADEACE YEEVIKLRKG
501: LMSYVSKTRE ERAKLVNIEE KLSEEVQKLQ EEVSSTRELL KERSSKKSII QQNITSFMDK IMFIEKRMPE LEAEKKVAAS TRNFKEAGRI AAEAKSLNLE
601: KDKTQMETGK ANAELEKAEH EIEETIKRLQ EIEKLILSKE KELAISRFQR LRIDSGTAKA ERSAALELSD LEEANLLLEE AQEAESEAEK LKLTGGLKEE
701: EEEEEKAKSN EVFVSMELIA TVGLKKLQEL VESVPS
Arabidopsis Description
Neurofilament light protein [Source:UniProtKB/TrEMBL;Acc:Q8L4Q6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.