Factsheet for AT5G25070.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74860	Canola	nucleus	73.64	77.54
Bra005056.1-P	Field mustard	nucleus	75.27	76.94
CDY44635	Canola	nucleus	75.0	76.03
KRH66324	Soybean	cytosol	19.43	45.4
KRH77981	Soybean	nucleus	41.85	42.08
VIT_18s0122g00110.t01	Wine grape	nucleus	44.57	41.89
PGSC0003DMT400065934	Potato	nucleus	41.85	39.59
GSMUA_Achr1P27870_001	Banana	nucleus	36.82	35.33
EES14249	Sorghum	nucleus	36.41	34.18
HORVU7Hr1G051520.12	Barley	cytosol, mitochondrion, nucleus, plastid	30.84	34.14
Zm00001d049744_P001	Maize	nucleus	35.6	33.81
TraesCS7B01G141000.1	Wheat	nucleus	35.87	33.33
TraesCS7A01G250200.1	Wheat	nucleus	35.87	33.08
TraesCS7D01G248900.1	Wheat	nucleus	35.73	33.08
GSMUA_Achr9P20030_001	Banana	nucleus	35.6	32.91
Zm00001d031489_P002	Maize	nucleus	34.78	31.64

Protein Annotations

MapMan:35.2	EntrezGene:832578	ProteinID:AED93396.1	ArrayExpress:AT5G25070	EnsemblPlantsGene:AT5G25070	RefSeq:AT5G25070
TAIR:AT5G25070	RefSeq:AT5G25070-TAIR-G	EnsemblPlants:AT5G25070.1	TAIR:AT5G25070.1	EMBL:AY099766	EMBL:AY128896
Unigene:At.43766	ncoils:Coil	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	RefSeq:NP_197889.1	PO:PO:0000005	PO:PO:0000013
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PANTHER:PTHR38394
UniProt:Q8L4Q6	UniParc:UPI00000AB31B	SEG:seg	:	:	:

Description

Neurofilament light protein [Source:UniProtKB/TrEMBL;Acc:Q8L4Q6]

Coordinates

chr5:-:8640754..8643516

Molecular Weight (calculated)

82145.2 Da

IEP (calculated)

4.358

GRAVY (calculated)

-0.651

Length

736 amino acids

Sequence
(BLAST)

001: MDGGDDMDSL FEGMELFTPA SQFSGDSKVS SPPQSEETKA AEATLITAPS QPDVTEATLI TATSQPDITE ALDENLFSDL TIVTPVQHQP EPMEAVITTH
101: QSPAKNYGRQ VSRRKKRAAG LRIGYGRHET NNLDEDEDDA VSQQSDSVSQ VSDSVSQISD SVAQVFDSGN QSLDSPVVTV VVGNGSSRLE LVKAQIEAKL
201: NRSRDLAASV TSARKNAIRK KRQASENLRL ASTTHEELEK QLEEAIETED FDAAERISES LAAKERDRLA LLALLRQAES DCDAIESKME EVLLSQIAAE
301: EESACLLRSF GTDAENDAGS ILEKAEAFYS DEMEKWHSCS EDVEVRKVEL DIESVVVDNV RLSLNGILEG SVEQDMKEKE ILQKKKEHLA NELEELLALV
401: KAKEKEIDEN DSQIEAVEER INNVVTGFKE LQTSMDKMLN DVQAGLTEVD KETEDLSRKK KDVDEFMTSE KERGAKLRDL ARVSADEACE YEEVIKLRKG
501: LMSYVSKTRE ERAKLVNIEE KLSEEVQKLQ EEVSSTRELL KERSSKKSII QQNITSFMDK IMFIEKRMPE LEAEKKVAAS TRNFKEAGRI AAEAKSLNLE
601: KDKTQMETGK ANAELEKAEH EIEETIKRLQ EIEKLILSKE KELAISRFQR LRIDSGTAKA ERSAALELSD LEEANLLLEE AQEAESEAEK LKLTGGLKEE
701: EEEEEKAKSN EVFVSMELIA TVGLKKLQEL VESVPS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.