Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d049744_P001 | Maize | nucleus | 76.39 | 79.74 |
| HORVU7Hr1G051520.12 | Barley | cytosol, mitochondrion, nucleus, plastid | 59.58 | 72.48 |
| TraesCS7A01G250200.1 | Wheat | nucleus | 66.25 | 67.17 |
| TraesCS7B01G141000.1 | Wheat | nucleus | 65.27 | 66.67 |
| TraesCS7D01G248900.1 | Wheat | nucleus | 65.39 | 66.54 |
| GSMUA_Achr1P27870_001 | Banana | nucleus | 43.76 | 46.15 |
| GSMUA_Achr9P20030_001 | Banana | nucleus | 42.4 | 43.09 |
| KRH66324 | Soybean | cytosol | 16.69 | 42.86 |
| KRH77981 | Soybean | nucleus | 35.23 | 38.93 |
| VIT_18s0122g00110.t01 | Wine grape | nucleus | 35.6 | 36.78 |
| CDX74860 | Canola | nucleus | 30.78 | 35.62 |
| Bra005056.1-P | Field mustard | nucleus | 31.52 | 35.42 |
| PGSC0003DMT400065934 | Potato | nucleus | 33.87 | 35.22 |
| CDY44635 | Canola | nucleus | 31.52 | 35.12 |
| AT5G25070.1 | Thale cress | cytosol | 31.64 | 34.78 |
Protein Annotations
| EnsemblPlants:Zm00001d031489_P002 | EnsemblPlants:Zm00001d031489_T002 | EnsemblPlantsGene:Zm00001d031489 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001943 | InterPro:UVR_dom | ncoils:Coil | PANTHER:PTHR38394 | PFAM:PF02151 | PFscan:PS50151 |
| ProteinID:ONM02966.1 | ProteinID:ONM02967.1 | SEG:seg | UniParc:UPI00022178E0 | UniProt:A0A1D6KJ41 | MapMan:35.2 |
Description
UvrB/uvrC motif family protein
Coordinates
chr1:-:191775183..191781020
Molecular Weight (calculated)
88276.5 Da
IEP (calculated)
4.373
GRAVY (calculated)
-0.469
Length
809 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRDDGWGG GEDGSSLFEG MVLFAPEPTA AEDSVPAPAP APAPAEDSVP VPAAVPELPS AARHDADAAS SVPPPLDEDL FSDLTLFAPP QEPLSLEQTP
101: PPLLPQGEDR SHAALAPAPL APTPGLSRQP STSSLRKKKR AVRIGYARSP QPAPPSPPAT VPASAAAAAI SASTIAFLDA SPYPAATRTL DQLPDRQLDV
201: HVNGYEAHAE AVDVDTNSPH VVEAVDVDTN SPRVEEEEAK EDDDGKEDED AGVAALGVKE RLGLLRSQIS GKLDSIQQRA AAVAAKRRLL AGRRRKVAEE
301: ATSVASRHKD LERELEVACE AEDFERAESI SDSLAALEKE KDGLLTALRD AELDYDSVDS ELQEVLESRI AAEEEAAILL EQFAKDANEH AISESKQAQE
401: LSSKEIEGWQ TSMELLETKK LEMEVETQLV LEARSGLEGS IEHLVEEDKL EEGTLSIKGE VLTKELADLL ELVRLKEAEI AENNARIHEV QERISAVVSR
501: FHGSQSDVDL KLNSLKEAQC KLDLETEALV LKKNEIDNFI SLTEQKDSEL REIIGACFSE AKTCQQSVEI RRKLASSILK SREDRIGLLK MEEEILQDIQ
601: MLRQKITDAR TTLQEVSSRR TSIQQEMDSF KQKLSFIDKR GPELEAEKKV AAAARNFKEA GRIAAEAKAL NSEKNELRGK LEKAATDLEL IEKDIAATTD
701: KIQECEGLVV LKEKDSALTS YKRLRLDCAA ARAELTAATE IHDNEEVEIL RKEAETADSK AMELKTCYDL QVEDNDFMFQ PVVPIAFITN STGQHLVEIA
801: SSFGLSPQK
101: PPLLPQGEDR SHAALAPAPL APTPGLSRQP STSSLRKKKR AVRIGYARSP QPAPPSPPAT VPASAAAAAI SASTIAFLDA SPYPAATRTL DQLPDRQLDV
201: HVNGYEAHAE AVDVDTNSPH VVEAVDVDTN SPRVEEEEAK EDDDGKEDED AGVAALGVKE RLGLLRSQIS GKLDSIQQRA AAVAAKRRLL AGRRRKVAEE
301: ATSVASRHKD LERELEVACE AEDFERAESI SDSLAALEKE KDGLLTALRD AELDYDSVDS ELQEVLESRI AAEEEAAILL EQFAKDANEH AISESKQAQE
401: LSSKEIEGWQ TSMELLETKK LEMEVETQLV LEARSGLEGS IEHLVEEDKL EEGTLSIKGE VLTKELADLL ELVRLKEAEI AENNARIHEV QERISAVVSR
501: FHGSQSDVDL KLNSLKEAQC KLDLETEALV LKKNEIDNFI SLTEQKDSEL REIIGACFSE AKTCQQSVEI RRKLASSILK SREDRIGLLK MEEEILQDIQ
601: MLRQKITDAR TTLQEVSSRR TSIQQEMDSF KQKLSFIDKR GPELEAEKKV AAAARNFKEA GRIAAEAKAL NSEKNELRGK LEKAATDLEL IEKDIAATTD
701: KIQECEGLVV LKEKDSALTS YKRLRLDCAA ARAELTAATE IHDNEEVEIL RKEAETADSK AMELKTCYDL QVEDNDFMFQ PVVPIAFITN STGQHLVEIA
801: SSFGLSPQK
001: MDGGDDMDSL FEGMELFTPA SQFSGDSKVS SPPQSEETKA AEATLITAPS QPDVTEATLI TATSQPDITE ALDENLFSDL TIVTPVQHQP EPMEAVITTH
101: QSPAKNYGRQ VSRRKKRAAG LRIGYGRHET NNLDEDEDDA VSQQSDSVSQ VSDSVSQISD SVAQVFDSGN QSLDSPVVTV VVGNGSSRLE LVKAQIEAKL
201: NRSRDLAASV TSARKNAIRK KRQASENLRL ASTTHEELEK QLEEAIETED FDAAERISES LAAKERDRLA LLALLRQAES DCDAIESKME EVLLSQIAAE
301: EESACLLRSF GTDAENDAGS ILEKAEAFYS DEMEKWHSCS EDVEVRKVEL DIESVVVDNV RLSLNGILEG SVEQDMKEKE ILQKKKEHLA NELEELLALV
401: KAKEKEIDEN DSQIEAVEER INNVVTGFKE LQTSMDKMLN DVQAGLTEVD KETEDLSRKK KDVDEFMTSE KERGAKLRDL ARVSADEACE YEEVIKLRKG
501: LMSYVSKTRE ERAKLVNIEE KLSEEVQKLQ EEVSSTRELL KERSSKKSII QQNITSFMDK IMFIEKRMPE LEAEKKVAAS TRNFKEAGRI AAEAKSLNLE
601: KDKTQMETGK ANAELEKAEH EIEETIKRLQ EIEKLILSKE KELAISRFQR LRIDSGTAKA ERSAALELSD LEEANLLLEE AQEAESEAEK LKLTGGLKEE
701: EEEEEKAKSN EVFVSMELIA TVGLKKLQEL VESVPS
101: QSPAKNYGRQ VSRRKKRAAG LRIGYGRHET NNLDEDEDDA VSQQSDSVSQ VSDSVSQISD SVAQVFDSGN QSLDSPVVTV VVGNGSSRLE LVKAQIEAKL
201: NRSRDLAASV TSARKNAIRK KRQASENLRL ASTTHEELEK QLEEAIETED FDAAERISES LAAKERDRLA LLALLRQAES DCDAIESKME EVLLSQIAAE
301: EESACLLRSF GTDAENDAGS ILEKAEAFYS DEMEKWHSCS EDVEVRKVEL DIESVVVDNV RLSLNGILEG SVEQDMKEKE ILQKKKEHLA NELEELLALV
401: KAKEKEIDEN DSQIEAVEER INNVVTGFKE LQTSMDKMLN DVQAGLTEVD KETEDLSRKK KDVDEFMTSE KERGAKLRDL ARVSADEACE YEEVIKLRKG
501: LMSYVSKTRE ERAKLVNIEE KLSEEVQKLQ EEVSSTRELL KERSSKKSII QQNITSFMDK IMFIEKRMPE LEAEKKVAAS TRNFKEAGRI AAEAKSLNLE
601: KDKTQMETGK ANAELEKAEH EIEETIKRLQ EIEKLILSKE KELAISRFQR LRIDSGTAKA ERSAALELSD LEEANLLLEE AQEAESEAEK LKLTGGLKEE
701: EEEEEKAKSN EVFVSMELIA TVGLKKLQEL VESVPS
Arabidopsis Description
Neurofilament light protein [Source:UniProtKB/TrEMBL;Acc:Q8L4Q6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.