Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14249 | Sorghum | nucleus | 86.45 | 85.46 |
| Zm00001d031489_P002 | Maize | nucleus | 79.74 | 76.39 |
| HORVU7Hr1G051520.12 | Barley | cytosol, mitochondrion, nucleus, plastid | 61.29 | 71.43 |
| TraesCS7B01G141000.1 | Wheat | nucleus | 69.29 | 67.8 |
| TraesCS7A01G250200.1 | Wheat | nucleus | 68.9 | 66.92 |
| TraesCS7D01G248900.1 | Wheat | nucleus | 68.52 | 66.79 |
| GSMUA_Achr1P27870_001 | Banana | nucleus | 45.55 | 46.02 |
| GSMUA_Achr9P20030_001 | Banana | nucleus | 42.45 | 41.33 |
| KRH66324 | Soybean | cytosol | 16.0 | 39.37 |
| KRH77981 | Soybean | nucleus | 35.87 | 37.98 |
| VIT_18s0122g00110.t01 | Wine grape | nucleus | 37.94 | 37.55 |
| CDX74860 | Canola | nucleus | 33.81 | 37.48 |
| CDY44635 | Canola | nucleus | 34.97 | 37.33 |
| Bra005056.1-P | Field mustard | nucleus | 34.19 | 36.81 |
| AT5G25070.1 | Thale cress | cytosol | 33.81 | 35.6 |
| PGSC0003DMT400065934 | Potato | nucleus | 35.35 | 35.22 |
Protein Annotations
| EMBL:BT066352 | EnsemblPlants:Zm00001d049744_P001 | EnsemblPlants:Zm00001d049744_T001 | EnsemblPlantsGene:Zm00001d049744 | EntrezGene:100383143 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001943 | InterPro:UVR_dom | ncoils:Coil | PANTHER:PTHR38394 |
| PFAM:PF02151 | PFscan:PS50151 | ProteinID:AQK51257.1 | SEG:seg | UniParc:UPI000195C9BE | UniProt:C0PDI3 |
| MapMan:35.2 | : | : | : | : | : |
Description
UvrB/uvrC motif family protein
Coordinates
chr4:-:42455373..42459192
Molecular Weight (calculated)
84357.7 Da
IEP (calculated)
4.406
GRAVY (calculated)
-0.484
Length
775 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQDDGWGG GEDGSSLFEG MVLFAPEPAA AEDSVPTPAP VPELTSAARP DADAASSAPP PLDEDLFSDL TLLAPQEPLS LEQPPPPPQG EDRSHAALAP
101: APPAAAAELS RQPSSSSLRK KKRAVRIGYG RLPQPAPPSP PASAAAAAIS ASSISFLDAS PHAAVTRILD QLPDRQVDVY ANGYEAHAEA VAVDTSSPRV
201: EAVATEDDGG GKEDEDAAVV ALGVEERLAL LRSQISSKLD SIQQTAAAVA AKRRLLAGRR RKVAEEAASV ASGHKDLERE LEEACEAEDF ERAERISDSL
301: ATLEKEKDRL STALRGAELD YDSVDSELQE VLESRIAAEE EAAALMEQFA KDATEHANSA SEHAQELSSK EIEEWQTSLE LLETKKLEME VETRLVLEAR
401: SGLEGSIEHL VEEDKLEKDM LSKKGEILTK ELAELLELVR LKEAEIAENN ARIHEVQERI SAVVSRFHGS QSDIDLKLSS LKEDQSKVDL ETEALLLKKN
501: EIDKFITLTD QKDSELRDII GACSSEAKAC RQSVEIRRKL ASSILKSRED RIGLLKMEEE ILQVIQMQRQ KITDARSTLQ EVSSRRTSIQ QETEALKQKL
601: SFIDKRGPEL EAEKKVAAAS RNFKEAGRIA AEAKALNSEK DELYGKLEKA ATDLETIEKD IVATTNKIQE CEGLIELKGR ESALTSYRRL RLDCAAARAE
701: LTAAAETDDN EEAEILRKEA EAAESKAMEL KTCYDLQVVD DEFVFQPVVP IAFITNSTGQ HLAEIASSLG LSPQK
101: APPAAAAELS RQPSSSSLRK KKRAVRIGYG RLPQPAPPSP PASAAAAAIS ASSISFLDAS PHAAVTRILD QLPDRQVDVY ANGYEAHAEA VAVDTSSPRV
201: EAVATEDDGG GKEDEDAAVV ALGVEERLAL LRSQISSKLD SIQQTAAAVA AKRRLLAGRR RKVAEEAASV ASGHKDLERE LEEACEAEDF ERAERISDSL
301: ATLEKEKDRL STALRGAELD YDSVDSELQE VLESRIAAEE EAAALMEQFA KDATEHANSA SEHAQELSSK EIEEWQTSLE LLETKKLEME VETRLVLEAR
401: SGLEGSIEHL VEEDKLEKDM LSKKGEILTK ELAELLELVR LKEAEIAENN ARIHEVQERI SAVVSRFHGS QSDIDLKLSS LKEDQSKVDL ETEALLLKKN
501: EIDKFITLTD QKDSELRDII GACSSEAKAC RQSVEIRRKL ASSILKSRED RIGLLKMEEE ILQVIQMQRQ KITDARSTLQ EVSSRRTSIQ QETEALKQKL
601: SFIDKRGPEL EAEKKVAAAS RNFKEAGRIA AEAKALNSEK DELYGKLEKA ATDLETIEKD IVATTNKIQE CEGLIELKGR ESALTSYRRL RLDCAAARAE
701: LTAAAETDDN EEAEILRKEA EAAESKAMEL KTCYDLQVVD DEFVFQPVVP IAFITNSTGQ HLAEIASSLG LSPQK
001: MDGGDDMDSL FEGMELFTPA SQFSGDSKVS SPPQSEETKA AEATLITAPS QPDVTEATLI TATSQPDITE ALDENLFSDL TIVTPVQHQP EPMEAVITTH
101: QSPAKNYGRQ VSRRKKRAAG LRIGYGRHET NNLDEDEDDA VSQQSDSVSQ VSDSVSQISD SVAQVFDSGN QSLDSPVVTV VVGNGSSRLE LVKAQIEAKL
201: NRSRDLAASV TSARKNAIRK KRQASENLRL ASTTHEELEK QLEEAIETED FDAAERISES LAAKERDRLA LLALLRQAES DCDAIESKME EVLLSQIAAE
301: EESACLLRSF GTDAENDAGS ILEKAEAFYS DEMEKWHSCS EDVEVRKVEL DIESVVVDNV RLSLNGILEG SVEQDMKEKE ILQKKKEHLA NELEELLALV
401: KAKEKEIDEN DSQIEAVEER INNVVTGFKE LQTSMDKMLN DVQAGLTEVD KETEDLSRKK KDVDEFMTSE KERGAKLRDL ARVSADEACE YEEVIKLRKG
501: LMSYVSKTRE ERAKLVNIEE KLSEEVQKLQ EEVSSTRELL KERSSKKSII QQNITSFMDK IMFIEKRMPE LEAEKKVAAS TRNFKEAGRI AAEAKSLNLE
601: KDKTQMETGK ANAELEKAEH EIEETIKRLQ EIEKLILSKE KELAISRFQR LRIDSGTAKA ERSAALELSD LEEANLLLEE AQEAESEAEK LKLTGGLKEE
701: EEEEEKAKSN EVFVSMELIA TVGLKKLQEL VESVPS
101: QSPAKNYGRQ VSRRKKRAAG LRIGYGRHET NNLDEDEDDA VSQQSDSVSQ VSDSVSQISD SVAQVFDSGN QSLDSPVVTV VVGNGSSRLE LVKAQIEAKL
201: NRSRDLAASV TSARKNAIRK KRQASENLRL ASTTHEELEK QLEEAIETED FDAAERISES LAAKERDRLA LLALLRQAES DCDAIESKME EVLLSQIAAE
301: EESACLLRSF GTDAENDAGS ILEKAEAFYS DEMEKWHSCS EDVEVRKVEL DIESVVVDNV RLSLNGILEG SVEQDMKEKE ILQKKKEHLA NELEELLALV
401: KAKEKEIDEN DSQIEAVEER INNVVTGFKE LQTSMDKMLN DVQAGLTEVD KETEDLSRKK KDVDEFMTSE KERGAKLRDL ARVSADEACE YEEVIKLRKG
501: LMSYVSKTRE ERAKLVNIEE KLSEEVQKLQ EEVSSTRELL KERSSKKSII QQNITSFMDK IMFIEKRMPE LEAEKKVAAS TRNFKEAGRI AAEAKSLNLE
601: KDKTQMETGK ANAELEKAEH EIEETIKRLQ EIEKLILSKE KELAISRFQR LRIDSGTAKA ERSAALELSD LEEANLLLEE AQEAESEAEK LKLTGGLKEE
701: EEEEEKAKSN EVFVSMELIA TVGLKKLQEL VESVPS
Arabidopsis Description
Neurofilament light protein [Source:UniProtKB/TrEMBL;Acc:Q8L4Q6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.