Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74860 | Canola | nucleus | 88.43 | 91.85 |
| AT5G25070.1 | Thale cress | cytosol | 76.03 | 75.0 |
| KRH66324 | Soybean | cytosol | 19.56 | 45.08 |
| VIT_18s0122g00110.t01 | Wine grape | nucleus | 46.56 | 43.17 |
| KRH77981 | Soybean | nucleus | 42.98 | 42.62 |
| PGSC0003DMT400065934 | Potato | nucleus | 42.15 | 39.33 |
| GSMUA_Achr1P27870_001 | Banana | nucleus | 38.43 | 36.38 |
| EES14249 | Sorghum | nucleus | 38.02 | 35.2 |
| Zm00001d049744_P001 | Maize | nucleus | 37.33 | 34.97 |
| GSMUA_Achr9P20030_001 | Banana | nucleus | 36.64 | 33.42 |
| HORVU7Hr1G051520.12 | Barley | cytosol, mitochondrion, nucleus, plastid | 30.58 | 33.38 |
| TraesCS7B01G141000.1 | Wheat | nucleus | 36.36 | 33.33 |
| TraesCS7A01G250200.1 | Wheat | nucleus | 36.5 | 33.21 |
| TraesCS7D01G248900.1 | Wheat | nucleus | 35.81 | 32.7 |
| Zm00001d031489_P002 | Maize | nucleus | 35.12 | 31.52 |
Protein Annotations
| EnsemblPlants:CDY44635 | EnsemblPlantsGene:GSBRNA2T00080590001 | ncoils:Coil | PANTHER:PTHR38394 | ProteinID:CDY44635 | ProteinID:CDY44635.1 |
| SEG:seg | UniParc:UPI0004EECEF9 | UniProt:A0A078I1A9 | MapMan:35.2 | : | : |
Description
BnaC04g06270DBnaC04g06270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1A9]
Coordinates
chrLK032597:-:149159..152270
Molecular Weight (calculated)
80895.2 Da
IEP (calculated)
4.251
GRAVY (calculated)
-0.656
Length
726 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGDDMDSL FEGMELFTPS SSQFADSTDN APAILPPSKE AEATVITAPA AEAMSEPLDE DMFSDLTIVT PVQHVPEAVT HPSPLPSSSS SSSMRRQVSR
101: RKKRSGGLRI GYGRHEINDD EDDDSVSQQS ADSVGQLSDS VNQVTDSVSQ QSDSVNQITD SVNQVTDSVN QPSDSVVDQP LDTVKAQIEG KLTRARALAA
201: SVTATRKNAI RKRRQASENL RLASKAHDEL EKQLEEAIEA EDFDAAEKIS ESLAGAERDK LSLAALLRQA ESDCDAIESK MEEVLLSQIA AEEESASLLR
301: GFCTDAENEA ESILEKADAF CLEETGKWNS RCEDVEFRKV ELDIESVIVD NVRLSLNDTL EGSVEQEMKE KEMLRKKKEH LSEELEELLA LVKAKEKEIE
401: ENDSQIKAVE ERINSVVSGY KELQTSMDKM FSDLQAGLSQ VDTETEDLSR KKKDVDEFVA SEKERGVKLR ELVSVSADEA NEYEEVIKLR ETLMSYVSKT
501: REERAKLVSI EEKLSEEVQR LQEEVSSTRE SLKEQSSRKS IIQQNITSFM DKIMFIEKRM PELEAEKKVA ASTRNFKEAG RIAAELKSLN LEKDKIQIET
601: GQANAELEKA EQEIEETIKR LQELEGLIFS KEKELSVSRF QRLRIDSGTA KAERSAALEL SDLEEANLLL EEAQEAESEA EKLKLTCGLK EEEDGEDEAK
701: ECFVSMELIA TFGLKKLQEL AESVPS
101: RKKRSGGLRI GYGRHEINDD EDDDSVSQQS ADSVGQLSDS VNQVTDSVSQ QSDSVNQITD SVNQVTDSVN QPSDSVVDQP LDTVKAQIEG KLTRARALAA
201: SVTATRKNAI RKRRQASENL RLASKAHDEL EKQLEEAIEA EDFDAAEKIS ESLAGAERDK LSLAALLRQA ESDCDAIESK MEEVLLSQIA AEEESASLLR
301: GFCTDAENEA ESILEKADAF CLEETGKWNS RCEDVEFRKV ELDIESVIVD NVRLSLNDTL EGSVEQEMKE KEMLRKKKEH LSEELEELLA LVKAKEKEIE
401: ENDSQIKAVE ERINSVVSGY KELQTSMDKM FSDLQAGLSQ VDTETEDLSR KKKDVDEFVA SEKERGVKLR ELVSVSADEA NEYEEVIKLR ETLMSYVSKT
501: REERAKLVSI EEKLSEEVQR LQEEVSSTRE SLKEQSSRKS IIQQNITSFM DKIMFIEKRM PELEAEKKVA ASTRNFKEAG RIAAELKSLN LEKDKIQIET
601: GQANAELEKA EQEIEETIKR LQELEGLIFS KEKELSVSRF QRLRIDSGTA KAERSAALEL SDLEEANLLL EEAQEAESEA EKLKLTCGLK EEEDGEDEAK
701: ECFVSMELIA TFGLKKLQEL AESVPS
001: MDGGDDMDSL FEGMELFTPA SQFSGDSKVS SPPQSEETKA AEATLITAPS QPDVTEATLI TATSQPDITE ALDENLFSDL TIVTPVQHQP EPMEAVITTH
101: QSPAKNYGRQ VSRRKKRAAG LRIGYGRHET NNLDEDEDDA VSQQSDSVSQ VSDSVSQISD SVAQVFDSGN QSLDSPVVTV VVGNGSSRLE LVKAQIEAKL
201: NRSRDLAASV TSARKNAIRK KRQASENLRL ASTTHEELEK QLEEAIETED FDAAERISES LAAKERDRLA LLALLRQAES DCDAIESKME EVLLSQIAAE
301: EESACLLRSF GTDAENDAGS ILEKAEAFYS DEMEKWHSCS EDVEVRKVEL DIESVVVDNV RLSLNGILEG SVEQDMKEKE ILQKKKEHLA NELEELLALV
401: KAKEKEIDEN DSQIEAVEER INNVVTGFKE LQTSMDKMLN DVQAGLTEVD KETEDLSRKK KDVDEFMTSE KERGAKLRDL ARVSADEACE YEEVIKLRKG
501: LMSYVSKTRE ERAKLVNIEE KLSEEVQKLQ EEVSSTRELL KERSSKKSII QQNITSFMDK IMFIEKRMPE LEAEKKVAAS TRNFKEAGRI AAEAKSLNLE
601: KDKTQMETGK ANAELEKAEH EIEETIKRLQ EIEKLILSKE KELAISRFQR LRIDSGTAKA ERSAALELSD LEEANLLLEE AQEAESEAEK LKLTGGLKEE
701: EEEEEKAKSN EVFVSMELIA TVGLKKLQEL VESVPS
101: QSPAKNYGRQ VSRRKKRAAG LRIGYGRHET NNLDEDEDDA VSQQSDSVSQ VSDSVSQISD SVAQVFDSGN QSLDSPVVTV VVGNGSSRLE LVKAQIEAKL
201: NRSRDLAASV TSARKNAIRK KRQASENLRL ASTTHEELEK QLEEAIETED FDAAERISES LAAKERDRLA LLALLRQAES DCDAIESKME EVLLSQIAAE
301: EESACLLRSF GTDAENDAGS ILEKAEAFYS DEMEKWHSCS EDVEVRKVEL DIESVVVDNV RLSLNGILEG SVEQDMKEKE ILQKKKEHLA NELEELLALV
401: KAKEKEIDEN DSQIEAVEER INNVVTGFKE LQTSMDKMLN DVQAGLTEVD KETEDLSRKK KDVDEFMTSE KERGAKLRDL ARVSADEACE YEEVIKLRKG
501: LMSYVSKTRE ERAKLVNIEE KLSEEVQKLQ EEVSSTRELL KERSSKKSII QQNITSFMDK IMFIEKRMPE LEAEKKVAAS TRNFKEAGRI AAEAKSLNLE
601: KDKTQMETGK ANAELEKAEH EIEETIKRLQ EIEKLILSKE KELAISRFQR LRIDSGTAKA ERSAALELSD LEEANLLLEE AQEAESEAEK LKLTGGLKEE
701: EEEEEKAKSN EVFVSMELIA TVGLKKLQEL VESVPS
Arabidopsis Description
Neurofilament light protein [Source:UniProtKB/TrEMBL;Acc:Q8L4Q6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.