Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G248900.1 | Wheat | nucleus | 91.16 | 90.82 |
| TraesCS7A01G250200.1 | Wheat | nucleus | 89.9 | 89.22 |
| HORVU7Hr1G051520.12 | Barley | cytosol, mitochondrion, nucleus, plastid | 74.62 | 88.87 |
| EES14249 | Sorghum | nucleus | 69.7 | 70.41 |
| Zm00001d049744_P001 | Maize | nucleus | 67.8 | 69.29 |
| Zm00001d031489_P002 | Maize | nucleus | 66.67 | 65.27 |
| GSMUA_Achr1P27870_001 | Banana | nucleus | 44.95 | 46.41 |
| GSMUA_Achr9P20030_001 | Banana | nucleus | 41.79 | 41.58 |
| KRH66324 | Soybean | cytosol | 16.16 | 40.63 |
| KRH77981 | Soybean | nucleus | 36.49 | 39.48 |
| VIT_18s0122g00110.t01 | Wine grape | nucleus | 38.76 | 39.21 |
| PGSC0003DMT400065934 | Potato | nucleus | 36.36 | 37.02 |
| CDX74860 | Canola | nucleus | 32.45 | 36.77 |
| Bra005056.1-P | Field mustard | nucleus | 33.21 | 36.53 |
| CDY44635 | Canola | nucleus | 33.33 | 36.36 |
| AT5G25070.1 | Thale cress | cytosol | 33.33 | 35.87 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G141000.1 | EnsemblPlantsGene:TraesCS7B01G141000 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | InterPro:IPR001943 | InterPro:UVR_dom |
| ncoils:Coil | PANTHER:PTHR38394 | PFAM:PF02151 | PFscan:PS50151 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr7B:+:179246857..179250015
Molecular Weight (calculated)
85836.9 Da
IEP (calculated)
4.309
GRAVY (calculated)
-0.515
Length
792 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQDGGWGD GGDSLFEGMV LFAPAAAEAE APEAPKPATP PADAAATSAS DAESSAASQP LDEDLFSDLT LLAPQTPLDQ DQHPQPQAQD QNHRPASPVA
101: VTPPPAAAAL SRQPSSSSLR KKKRAVRIGY GRSPQTAPAL PPTVPIATAA AAPAAATATV LRTASSSSSL SDASTYDAVP PIPIQYLDQL GNDDERDAAV
201: VDPDANSLDA VSVNSLDAKQ EAKEEDGDKD AGEAVVAVVG IDERLALLRS QISSKLDSVQ QRAAAVAAKR RQLAGRQRKV AEDVGSAASK HKDLERELEE
301: ACEAEDFERA ERISDSLAAL EKDKDRLLTA LRDAELDYDS VDLELQDVLE SRIAVEEEAA ALLEQYAKDA TEHADSVSKQ AEEMSSKEIE GWQTSMELLQ
401: IKKLETEVET ELVLAARSGL EGSVEHLIED DKREKDILSK KGETLAVELA ELLELVRLKE AEIAENNAQI QEVQERISAV VSRSHGSQSD IDMKINSLQE
501: SQTKIDQDTE ALALKKNEID NCISSAEQKD SDLREIINAC SSEAKACQQS VEIRRKLASS ILKSRQDRIG LLKMEEEISQ DIQMLRQQTT DARTSLQEIS
601: SKRAGIQQEI ATCKQKLSFI DKRGPELEAE KKVAAAARNF KEAGRIAAEA KVLNSEKEEL RAKLEKAGTD LEVIEKDITA TTDKIQECEG LIVLKEQESA
701: MASYKRLRLD SSAARAELTA ATETDDGEEV EILHKEAEAA ESKALELKTL YNLQPDSDEY IFQPVVPIAF ITNSTWQHLA EMAFSFGLSP ET
101: VTPPPAAAAL SRQPSSSSLR KKKRAVRIGY GRSPQTAPAL PPTVPIATAA AAPAAATATV LRTASSSSSL SDASTYDAVP PIPIQYLDQL GNDDERDAAV
201: VDPDANSLDA VSVNSLDAKQ EAKEEDGDKD AGEAVVAVVG IDERLALLRS QISSKLDSVQ QRAAAVAAKR RQLAGRQRKV AEDVGSAASK HKDLERELEE
301: ACEAEDFERA ERISDSLAAL EKDKDRLLTA LRDAELDYDS VDLELQDVLE SRIAVEEEAA ALLEQYAKDA TEHADSVSKQ AEEMSSKEIE GWQTSMELLQ
401: IKKLETEVET ELVLAARSGL EGSVEHLIED DKREKDILSK KGETLAVELA ELLELVRLKE AEIAENNAQI QEVQERISAV VSRSHGSQSD IDMKINSLQE
501: SQTKIDQDTE ALALKKNEID NCISSAEQKD SDLREIINAC SSEAKACQQS VEIRRKLASS ILKSRQDRIG LLKMEEEISQ DIQMLRQQTT DARTSLQEIS
601: SKRAGIQQEI ATCKQKLSFI DKRGPELEAE KKVAAAARNF KEAGRIAAEA KVLNSEKEEL RAKLEKAGTD LEVIEKDITA TTDKIQECEG LIVLKEQESA
701: MASYKRLRLD SSAARAELTA ATETDDGEEV EILHKEAEAA ESKALELKTL YNLQPDSDEY IFQPVVPIAF ITNSTWQHLA EMAFSFGLSP ET
001: MDGGDDMDSL FEGMELFTPA SQFSGDSKVS SPPQSEETKA AEATLITAPS QPDVTEATLI TATSQPDITE ALDENLFSDL TIVTPVQHQP EPMEAVITTH
101: QSPAKNYGRQ VSRRKKRAAG LRIGYGRHET NNLDEDEDDA VSQQSDSVSQ VSDSVSQISD SVAQVFDSGN QSLDSPVVTV VVGNGSSRLE LVKAQIEAKL
201: NRSRDLAASV TSARKNAIRK KRQASENLRL ASTTHEELEK QLEEAIETED FDAAERISES LAAKERDRLA LLALLRQAES DCDAIESKME EVLLSQIAAE
301: EESACLLRSF GTDAENDAGS ILEKAEAFYS DEMEKWHSCS EDVEVRKVEL DIESVVVDNV RLSLNGILEG SVEQDMKEKE ILQKKKEHLA NELEELLALV
401: KAKEKEIDEN DSQIEAVEER INNVVTGFKE LQTSMDKMLN DVQAGLTEVD KETEDLSRKK KDVDEFMTSE KERGAKLRDL ARVSADEACE YEEVIKLRKG
501: LMSYVSKTRE ERAKLVNIEE KLSEEVQKLQ EEVSSTRELL KERSSKKSII QQNITSFMDK IMFIEKRMPE LEAEKKVAAS TRNFKEAGRI AAEAKSLNLE
601: KDKTQMETGK ANAELEKAEH EIEETIKRLQ EIEKLILSKE KELAISRFQR LRIDSGTAKA ERSAALELSD LEEANLLLEE AQEAESEAEK LKLTGGLKEE
701: EEEEEKAKSN EVFVSMELIA TVGLKKLQEL VESVPS
101: QSPAKNYGRQ VSRRKKRAAG LRIGYGRHET NNLDEDEDDA VSQQSDSVSQ VSDSVSQISD SVAQVFDSGN QSLDSPVVTV VVGNGSSRLE LVKAQIEAKL
201: NRSRDLAASV TSARKNAIRK KRQASENLRL ASTTHEELEK QLEEAIETED FDAAERISES LAAKERDRLA LLALLRQAES DCDAIESKME EVLLSQIAAE
301: EESACLLRSF GTDAENDAGS ILEKAEAFYS DEMEKWHSCS EDVEVRKVEL DIESVVVDNV RLSLNGILEG SVEQDMKEKE ILQKKKEHLA NELEELLALV
401: KAKEKEIDEN DSQIEAVEER INNVVTGFKE LQTSMDKMLN DVQAGLTEVD KETEDLSRKK KDVDEFMTSE KERGAKLRDL ARVSADEACE YEEVIKLRKG
501: LMSYVSKTRE ERAKLVNIEE KLSEEVQKLQ EEVSSTRELL KERSSKKSII QQNITSFMDK IMFIEKRMPE LEAEKKVAAS TRNFKEAGRI AAEAKSLNLE
601: KDKTQMETGK ANAELEKAEH EIEETIKRLQ EIEKLILSKE KELAISRFQR LRIDSGTAKA ERSAALELSD LEEANLLLEE AQEAESEAEK LKLTGGLKEE
701: EEEEEKAKSN EVFVSMELIA TVGLKKLQEL VESVPS
Arabidopsis Description
Neurofilament light protein [Source:UniProtKB/TrEMBL;Acc:Q8L4Q6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.