Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0122g00110.t01 | Wine grape | nucleus | 47.94 | 47.64 |
| KRH77981 | Soybean | nucleus | 42.29 | 44.95 |
| KRH66324 | Soybean | cytosol | 18.12 | 44.76 |
| CDX74860 | Canola | nucleus | 38.95 | 43.35 |
| Bra005056.1-P | Field mustard | nucleus | 39.59 | 42.78 |
| CDY44635 | Canola | nucleus | 39.33 | 42.15 |
| AT5G25070.1 | Thale cress | cytosol | 39.59 | 41.85 |
| GSMUA_Achr1P27870_001 | Banana | nucleus | 38.3 | 38.85 |
| HORVU7Hr1G051520.12 | Barley | cytosol, mitochondrion, nucleus, plastid | 31.36 | 36.69 |
| GSMUA_Achr9P20030_001 | Banana | nucleus | 37.53 | 36.68 |
| TraesCS7B01G141000.1 | Wheat | nucleus | 37.02 | 36.36 |
| TraesCS7A01G250200.1 | Wheat | nucleus | 37.15 | 36.22 |
| TraesCS7D01G248900.1 | Wheat | nucleus | 36.76 | 35.97 |
| EES14249 | Sorghum | nucleus | 35.73 | 35.46 |
| Zm00001d049744_P001 | Maize | nucleus | 35.22 | 35.35 |
| Zm00001d031489_P002 | Maize | nucleus | 35.22 | 33.87 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400065934 | EnsemblPlantsGene:PGSC0003DMG400025663 | EntrezGene:102593542 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | ncoils:Coil | PANTHER:PTHR38394 | PGSC:PGSC0003DMG400025663 | RefSeq:XP_006342208.1 |
| SEG:seg | UniParc:UPI0002955476 | UniProt:M1CET8 | MapMan:35.2 | : | : |
Description
UvrB/uvrC motif family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025663]
Coordinates
chr4:-:72134964..72142749
Molecular Weight (calculated)
87499.0 Da
IEP (calculated)
4.414
GRAVY (calculated)
-0.604
Length
778 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKEDCMEKD EMDSLFEGMV LFNPSADVGH HAQLSTIADA DADADASTSS PSQVSNEPLD ENLFSDLTLM TPSQSLLLDE EEDETQPPSD LPLVSRQNSS
101: RRRKKAGLRI GYGRDRDYAD HRPQSSHTHL NSHSDISSVL AAIQDKEANQ EQKFEQEAEE SRDEEKNISS ITTAKEQDSS TEKLNNGTDS LNYPNKKLNL
201: SSATPISSTL DDDEYMDAGH LNVIANPVEL KFDQIRATIA DKLKLAQEAV ISVSALRKES IRRRREAVEE FNGASTRHRD LEKKLDEACE AEDFETAERV
301: SENLASAEKE KEQSVILLRD AETYCDVIDT KMQDVLVSLI QAEEECVYLL RRFSEEAASN ADSILMDAET ISSKDGAEWL SSVEAIEVSK FELEIQSQLV
401: HGAKSVLNES IDHSVEDDRR EIDVLCKRKE VLAEELRELL AFVKEKEAEI AENDALIQKV EHRIDGVVSC FKEVQESIYN NYDKLQSHLS ELMAENDVLL
501: KRKKDIDSYL SQQESRGEKI KNLSRISADE ANVYEEVVGL RKSLAVFISK SKAYRLNLAK SEERISEEVQ ILKQDFFAAR ASLQVLSSTK SSIQQEVESC
601: KQRLLFIDRR LPELEAEKKV AAATRNFKEA ARLSAEAKAL CIEKEEIQRK MDSTESELKK LEEEICHTID RMQETEVQIS SKEKELAMAR FQRLILIARE
701: ARAERSAALE LGDHEEAESL MAEADAAEVE ARKLQPIYNF NEEAIENLPE VFISAELVST LGNKQLAELA ASANIAAS
101: RRRKKAGLRI GYGRDRDYAD HRPQSSHTHL NSHSDISSVL AAIQDKEANQ EQKFEQEAEE SRDEEKNISS ITTAKEQDSS TEKLNNGTDS LNYPNKKLNL
201: SSATPISSTL DDDEYMDAGH LNVIANPVEL KFDQIRATIA DKLKLAQEAV ISVSALRKES IRRRREAVEE FNGASTRHRD LEKKLDEACE AEDFETAERV
301: SENLASAEKE KEQSVILLRD AETYCDVIDT KMQDVLVSLI QAEEECVYLL RRFSEEAASN ADSILMDAET ISSKDGAEWL SSVEAIEVSK FELEIQSQLV
401: HGAKSVLNES IDHSVEDDRR EIDVLCKRKE VLAEELRELL AFVKEKEAEI AENDALIQKV EHRIDGVVSC FKEVQESIYN NYDKLQSHLS ELMAENDVLL
501: KRKKDIDSYL SQQESRGEKI KNLSRISADE ANVYEEVVGL RKSLAVFISK SKAYRLNLAK SEERISEEVQ ILKQDFFAAR ASLQVLSSTK SSIQQEVESC
601: KQRLLFIDRR LPELEAEKKV AAATRNFKEA ARLSAEAKAL CIEKEEIQRK MDSTESELKK LEEEICHTID RMQETEVQIS SKEKELAMAR FQRLILIARE
701: ARAERSAALE LGDHEEAESL MAEADAAEVE ARKLQPIYNF NEEAIENLPE VFISAELVST LGNKQLAELA ASANIAAS
001: MDGGDDMDSL FEGMELFTPA SQFSGDSKVS SPPQSEETKA AEATLITAPS QPDVTEATLI TATSQPDITE ALDENLFSDL TIVTPVQHQP EPMEAVITTH
101: QSPAKNYGRQ VSRRKKRAAG LRIGYGRHET NNLDEDEDDA VSQQSDSVSQ VSDSVSQISD SVAQVFDSGN QSLDSPVVTV VVGNGSSRLE LVKAQIEAKL
201: NRSRDLAASV TSARKNAIRK KRQASENLRL ASTTHEELEK QLEEAIETED FDAAERISES LAAKERDRLA LLALLRQAES DCDAIESKME EVLLSQIAAE
301: EESACLLRSF GTDAENDAGS ILEKAEAFYS DEMEKWHSCS EDVEVRKVEL DIESVVVDNV RLSLNGILEG SVEQDMKEKE ILQKKKEHLA NELEELLALV
401: KAKEKEIDEN DSQIEAVEER INNVVTGFKE LQTSMDKMLN DVQAGLTEVD KETEDLSRKK KDVDEFMTSE KERGAKLRDL ARVSADEACE YEEVIKLRKG
501: LMSYVSKTRE ERAKLVNIEE KLSEEVQKLQ EEVSSTRELL KERSSKKSII QQNITSFMDK IMFIEKRMPE LEAEKKVAAS TRNFKEAGRI AAEAKSLNLE
601: KDKTQMETGK ANAELEKAEH EIEETIKRLQ EIEKLILSKE KELAISRFQR LRIDSGTAKA ERSAALELSD LEEANLLLEE AQEAESEAEK LKLTGGLKEE
701: EEEEEKAKSN EVFVSMELIA TVGLKKLQEL VESVPS
101: QSPAKNYGRQ VSRRKKRAAG LRIGYGRHET NNLDEDEDDA VSQQSDSVSQ VSDSVSQISD SVAQVFDSGN QSLDSPVVTV VVGNGSSRLE LVKAQIEAKL
201: NRSRDLAASV TSARKNAIRK KRQASENLRL ASTTHEELEK QLEEAIETED FDAAERISES LAAKERDRLA LLALLRQAES DCDAIESKME EVLLSQIAAE
301: EESACLLRSF GTDAENDAGS ILEKAEAFYS DEMEKWHSCS EDVEVRKVEL DIESVVVDNV RLSLNGILEG SVEQDMKEKE ILQKKKEHLA NELEELLALV
401: KAKEKEIDEN DSQIEAVEER INNVVTGFKE LQTSMDKMLN DVQAGLTEVD KETEDLSRKK KDVDEFMTSE KERGAKLRDL ARVSADEACE YEEVIKLRKG
501: LMSYVSKTRE ERAKLVNIEE KLSEEVQKLQ EEVSSTRELL KERSSKKSII QQNITSFMDK IMFIEKRMPE LEAEKKVAAS TRNFKEAGRI AAEAKSLNLE
601: KDKTQMETGK ANAELEKAEH EIEETIKRLQ EIEKLILSKE KELAISRFQR LRIDSGTAKA ERSAALELSD LEEANLLLEE AQEAESEAEK LKLTGGLKEE
701: EEEEEKAKSN EVFVSMELIA TVGLKKLQEL VESVPS
Arabidopsis Description
Neurofilament light protein [Source:UniProtKB/TrEMBL;Acc:Q8L4Q6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.