Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH66324 | Soybean | cytosol | 21.97 | 54.6 |
| KRH77981 | Soybean | nucleus | 48.66 | 52.05 |
| CDX74860 | Canola | nucleus | 43.55 | 48.78 |
| PGSC0003DMT400065934 | Potato | nucleus | 47.64 | 47.94 |
| Bra005056.1-P | Field mustard | nucleus | 43.42 | 47.22 |
| CDY44635 | Canola | nucleus | 43.17 | 46.56 |
| AT5G25070.1 | Thale cress | cytosol | 41.89 | 44.57 |
| GSMUA_Achr1P27870_001 | Banana | nucleus | 42.27 | 43.16 |
| HORVU7Hr1G051520.12 | Barley | cytosol, mitochondrion, nucleus, plastid | 34.23 | 40.3 |
| GSMUA_Achr9P20030_001 | Banana | nucleus | 40.61 | 39.95 |
| TraesCS7B01G141000.1 | Wheat | nucleus | 39.21 | 38.76 |
| TraesCS7A01G250200.1 | Wheat | nucleus | 39.34 | 38.6 |
| TraesCS7D01G248900.1 | Wheat | nucleus | 39.08 | 38.49 |
| EES14249 | Sorghum | nucleus | 38.06 | 38.01 |
| Zm00001d049744_P001 | Maize | nucleus | 37.55 | 37.94 |
| Zm00001d031489_P002 | Maize | nucleus | 36.78 | 35.6 |
Protein Annotations
| ArrayExpress:VIT_18s0122g00110 | EMBL:FN596759 | EnsemblPlants:VIT_18s0122g00110.t01 | EnsemblPlantsGene:VIT_18s0122g00110 | EntrezGene:100246165 | EntrezGene:LOC100246165 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | ncoils:Coil |
| PANTHER:PTHR38394 | ProteinID:CCB62703 | ProteinID:CCB62703.1 | RefSeq:XP_002274237 | RefSeq:XP_002274237.1 | SEG:seg |
| UniParc:UPI0002108ED0 | UniProt:F6I6Y5 | wikigene:100246165 | wikigene:LOC100246165 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr18:+:138685..159745
Molecular Weight (calculated)
87570.7 Da
IEP (calculated)
4.407
GRAVY (calculated)
-0.558
Length
783 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEADEMDS LFEGMILFNP SQTLADQDGV DGNCDPIPLT DASASLSSSS SQPLDENLFS DLTLITPNQF RNPLLDPSPT PISTSTTREE TPSVSRQISR
101: KKKRASLRIG YGRDSLNQLS LVDDAEVQSS PSDDSHSQTK SFSLLPDETL DSHPSPPTTS QAILVREDHD LVLDDVQFKP FPQQNEQEQI QLEEEKTTCS
201: TSTEANFDRV RAIISEKLHH ARQLAASISA SRKDSMRRRR KAAQNLNLAS TKSMELEKEL EEACEAEDFE MAERLSQSLA GAEKDKQAFI AALRDAEAEC
301: DAIDSKMQEV LERQITAEEE CVSLLEQFAT DAANNANEIS KRAQFLSSKE MDQWFSSTEA LEVRKLELEI ESHLISDTRL LLNDSIEHAA EDERREREFL
401: CKRKDTLMDE LEKLLALVRE KEDEIAENDA NIKAVDKRIA DVVSGFQEMH LSINMKYDNL QSSLSQTELE SEALSMKKKE IDDLLSEEEE RGAKLRELAR
501: ISADEAKAYE EVVGLRKSFA LSIVKSREDK LRLAKTEEKL SEEVQILRQE VSAARASLQE LSSTKSSIQQ EIASSKQRIF FIDKIVPELE AEKKVAAAAR
601: NFKEAARVAA EAKKLSVEKE GEEVKMDGAM LELGKLEEEI KDTVNWLVEA DELILFKEKE VAMARFQRLL LVAGAAKAER LAAVELGDLE EANLLLAEAE
701: AAEVEAKNLE QSYNFKEEEF ENLPKHFMSM ELVSNLGGKQ LAELAASVHL PALYCSNRPE PSSVHTAPAY NGASGRQITF QEK
101: KKKRASLRIG YGRDSLNQLS LVDDAEVQSS PSDDSHSQTK SFSLLPDETL DSHPSPPTTS QAILVREDHD LVLDDVQFKP FPQQNEQEQI QLEEEKTTCS
201: TSTEANFDRV RAIISEKLHH ARQLAASISA SRKDSMRRRR KAAQNLNLAS TKSMELEKEL EEACEAEDFE MAERLSQSLA GAEKDKQAFI AALRDAEAEC
301: DAIDSKMQEV LERQITAEEE CVSLLEQFAT DAANNANEIS KRAQFLSSKE MDQWFSSTEA LEVRKLELEI ESHLISDTRL LLNDSIEHAA EDERREREFL
401: CKRKDTLMDE LEKLLALVRE KEDEIAENDA NIKAVDKRIA DVVSGFQEMH LSINMKYDNL QSSLSQTELE SEALSMKKKE IDDLLSEEEE RGAKLRELAR
501: ISADEAKAYE EVVGLRKSFA LSIVKSREDK LRLAKTEEKL SEEVQILRQE VSAARASLQE LSSTKSSIQQ EIASSKQRIF FIDKIVPELE AEKKVAAAAR
601: NFKEAARVAA EAKKLSVEKE GEEVKMDGAM LELGKLEEEI KDTVNWLVEA DELILFKEKE VAMARFQRLL LVAGAAKAER LAAVELGDLE EANLLLAEAE
701: AAEVEAKNLE QSYNFKEEEF ENLPKHFMSM ELVSNLGGKQ LAELAASVHL PALYCSNRPE PSSVHTAPAY NGASGRQITF QEK
001: MDGGDDMDSL FEGMELFTPA SQFSGDSKVS SPPQSEETKA AEATLITAPS QPDVTEATLI TATSQPDITE ALDENLFSDL TIVTPVQHQP EPMEAVITTH
101: QSPAKNYGRQ VSRRKKRAAG LRIGYGRHET NNLDEDEDDA VSQQSDSVSQ VSDSVSQISD SVAQVFDSGN QSLDSPVVTV VVGNGSSRLE LVKAQIEAKL
201: NRSRDLAASV TSARKNAIRK KRQASENLRL ASTTHEELEK QLEEAIETED FDAAERISES LAAKERDRLA LLALLRQAES DCDAIESKME EVLLSQIAAE
301: EESACLLRSF GTDAENDAGS ILEKAEAFYS DEMEKWHSCS EDVEVRKVEL DIESVVVDNV RLSLNGILEG SVEQDMKEKE ILQKKKEHLA NELEELLALV
401: KAKEKEIDEN DSQIEAVEER INNVVTGFKE LQTSMDKMLN DVQAGLTEVD KETEDLSRKK KDVDEFMTSE KERGAKLRDL ARVSADEACE YEEVIKLRKG
501: LMSYVSKTRE ERAKLVNIEE KLSEEVQKLQ EEVSSTRELL KERSSKKSII QQNITSFMDK IMFIEKRMPE LEAEKKVAAS TRNFKEAGRI AAEAKSLNLE
601: KDKTQMETGK ANAELEKAEH EIEETIKRLQ EIEKLILSKE KELAISRFQR LRIDSGTAKA ERSAALELSD LEEANLLLEE AQEAESEAEK LKLTGGLKEE
701: EEEEEKAKSN EVFVSMELIA TVGLKKLQEL VESVPS
101: QSPAKNYGRQ VSRRKKRAAG LRIGYGRHET NNLDEDEDDA VSQQSDSVSQ VSDSVSQISD SVAQVFDSGN QSLDSPVVTV VVGNGSSRLE LVKAQIEAKL
201: NRSRDLAASV TSARKNAIRK KRQASENLRL ASTTHEELEK QLEEAIETED FDAAERISES LAAKERDRLA LLALLRQAES DCDAIESKME EVLLSQIAAE
301: EESACLLRSF GTDAENDAGS ILEKAEAFYS DEMEKWHSCS EDVEVRKVEL DIESVVVDNV RLSLNGILEG SVEQDMKEKE ILQKKKEHLA NELEELLALV
401: KAKEKEIDEN DSQIEAVEER INNVVTGFKE LQTSMDKMLN DVQAGLTEVD KETEDLSRKK KDVDEFMTSE KERGAKLRDL ARVSADEACE YEEVIKLRKG
501: LMSYVSKTRE ERAKLVNIEE KLSEEVQKLQ EEVSSTRELL KERSSKKSII QQNITSFMDK IMFIEKRMPE LEAEKKVAAS TRNFKEAGRI AAEAKSLNLE
601: KDKTQMETGK ANAELEKAEH EIEETIKRLQ EIEKLILSKE KELAISRFQR LRIDSGTAKA ERSAALELSD LEEANLLLEE AQEAESEAEK LKLTGGLKEE
701: EEEEEKAKSN EVFVSMELIA TVGLKKLQEL VESVPS
Arabidopsis Description
Neurofilament light protein [Source:UniProtKB/TrEMBL;Acc:Q8L4Q6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.