Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68674 | Canola | nucleus | 51.48 | 58.65 |
| Bra011204.1-P | Field mustard | nucleus | 50.21 | 57.49 |
| CDY28197 | Canola | nucleus | 50.21 | 57.49 |
| Bra041159.1-P | Field mustard | cytosol | 31.22 | 56.49 |
| Bra024058.1-P | Field mustard | nucleus | 48.1 | 56.16 |
| CDY39225 | Canola | nucleus | 45.15 | 53.5 |
| AT5G57910.1 | Thale cress | nucleus | 29.11 | 33.33 |
| VIT_11s0037g00390.t01 | Wine grape | nucleus | 30.38 | 30.51 |
| KRH72318 | Soybean | cytosol | 32.49 | 29.73 |
| KRH03036 | Soybean | nucleus | 32.07 | 29.57 |
| Solyc12g009970.1.1 | Tomato | nucleus | 30.8 | 24.66 |
| PGSC0003DMT400020258 | Potato | nucleus | 29.54 | 23.73 |
| Solyc07g005690.2.1 | Tomato | cytosol | 27.85 | 22.15 |
| PGSC0003DMT400028944 | Potato | cytosol | 27.85 | 22.0 |
Protein Annotations
| MapMan:35.2 | EntrezGene:829186 | ProteinID:AEE85788.1 | EMBL:AK175348 | ArrayExpress:AT4G30630 | EnsemblPlantsGene:AT4G30630 |
| RefSeq:AT4G30630 | TAIR:AT4G30630 | RefSeq:AT4G30630-TAIR-G | EnsemblPlants:AT4G30630.1 | TAIR:AT4G30630.1 | EMBL:AY087207 |
| EMBL:BT024617 | ProteinID:CAB79781.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0008150 | RefSeq:NP_194792.1 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR34807 | PANTHER:PTHR34807:SF3 | UniProt:Q9M097 | UniParc:UPI00000AAA99 | SEG:seg |
Description
At4g30630 [Source:UniProtKB/TrEMBL;Acc:Q9M097]
Coordinates
chr4:+:14950320..14952446
Molecular Weight (calculated)
26901.5 Da
IEP (calculated)
9.528
GRAVY (calculated)
-0.721
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKTNFVSSA SGGDPMIRLT FVQVLELEKE LEIKRKRLEM IKQKRLTLKS EVRFLRRRYE HLKQDQTLET SPEMLRLSES GGLEVPRKPS GERKKQSGVR
101: ASVPCFDLKL KNTICNEKEA LANNVASCDL DKKRKRSRGS DVLTFPVSLP DLNGEGNTSG TDKVPGFDLN QISREEEEPE VNGEHMVAEA MKNAMLDNRI
201: SDLHVERKLP ICGDVEKELN RAVKRKVTWQ DPVALSV
101: ASVPCFDLKL KNTICNEKEA LANNVASCDL DKKRKRSRGS DVLTFPVSLP DLNGEGNTSG TDKVPGFDLN QISREEEEPE VNGEHMVAEA MKNAMLDNRI
201: SDLHVERKLP ICGDVEKELN RAVKRKVTWQ DPVALSV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.