Factsheet for Solyc12g009970.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc06g072990.1.1
Solyc08g022030.2.1
Solyc08g066070.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57910.1	Solyc08g066070.1.1	AT1G07000.1	21798944
AT5G57910.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT5G57910.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT5G57910.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT5G57910.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT5G57910.1	Solyc08g022030.2.1	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020258	Potato	nucleus	89.53	89.83
VIT_11s0037g00390.t01	Wine grape	nucleus	36.82	46.19
Solyc07g005690.2.1	Tomato	cytosol	46.28	45.97
CDX68674	Canola	nucleus	27.36	38.94
Bra011204.1-P	Field mustard	nucleus	27.03	38.65
CDY28197	Canola	nucleus	27.03	38.65
KRH72318	Soybean	cytosol	33.78	38.61
Bra002685.1-P	Field mustard	nucleus	25.0	38.14
KRH03036	Soybean	nucleus	33.11	38.13
CDY51271	Canola	nucleus	24.66	37.63
CDY57462	Canola	nucleus	25.0	36.82
Bra024058.1-P	Field mustard	nucleus	24.66	35.96
CDY39225	Canola	nucleus	23.99	35.5
AT5G57910.1	Thale cress	nucleus	24.32	34.78
CDY02778	Canola	nucleus	22.64	34.36
CDY32739	Canola	nucleus	21.96	33.68
Bra020404.1-P	Field mustard	nucleus	22.97	33.33
CDY11841	Canola	nucleus	22.3	30.99
AT4G30630.1	Thale cress	nucleus	24.66	30.8
CDX88648	Canola	nucleus	21.96	30.66
Bra041159.1-P	Field mustard	cytosol	13.51	30.53
Bra006793.1-P	Field mustard	mitochondrion, nucleus	16.22	29.27

Protein Annotations

EnsemblPlants:Solyc12g009970.1.1	EnsemblPlantsGene:Solyc12g009970.1	ncoils:Coil	PANTHER:PTHR34807	PANTHER:PTHR34807:SF3	SEG:seg
UniParc:UPI0002769CC6	UniProt:K4DC85	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr12:-:3120151..3122378

Molecular Weight (calculated)

33697.1 Da

IEP (calculated)

10.414

GRAVY (calculated)

-0.984

Length

296 amino acids

Sequence
(BLAST)

001: MSKKMKRGAL ESSSYGVFED TKDRLKHQTL LQDYQELQKE TDAARHKLED SKLRKLRLQA EVRFLRQRHK HLLQSKSLTT PKGKELVSLP NVETYPRSRS
101: RDQVTRKKEA KLNKLPPLPG PKPNGRIQVA KVVASQNIPD IHVNQKHRLG GRQESVFRNA DLELNRKSRV YRGKDVSSRK GAPAYDLKQD ERLCIADNAI
201: LQSSSPTFDL NQDAGHSGKE TALPTRAPVF DLNEISMGEE ERDGNSEQVQ LEEPKRSPIQ NLNDDVKLLV CRNVGEDTSR LGKQKLSWQD PVALRV

Best Arabidopsis Sequence Match ( AT4G30630.1 )
(BLAST)

001: MKKTNFVSSA SGGDPMIRLT FVQVLELEKE LEIKRKRLEM IKQKRLTLKS EVRFLRRRYE HLKQDQTLET SPEMLRLSES GGLEVPRKPS GERKKQSGVR
101: ASVPCFDLKL KNTICNEKEA LANNVASCDL DKKRKRSRGS DVLTFPVSLP DLNGEGNTSG TDKVPGFDLN QISREEEEPE VNGEHMVAEA MKNAMLDNRI
201: SDLHVERKLP ICGDVEKELN RAVKRKVTWQ DPVALSV

Arabidopsis Description

At4g30630 [Source:UniProtKB/TrEMBL;Acc:Q9M097]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.