Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001475 | Potato | plastid | 93.04 | 90.68 |
| Solyc03g096780.1.1 | Tomato | nucleus | 74.78 | 76.11 |
| Solyc03g096760.1.1 | Tomato | plastid | 68.7 | 70.54 |
| Solyc06g072990.1.1 | Tomato | cytosol, plastid | 65.22 | 65.79 |
| Bra017974.1-P | Field mustard | cytosol | 36.52 | 48.84 |
| KRH53667 | Soybean | cytosol, extracellular, nucleus | 48.7 | 46.67 |
| AT5G24655.1 | Thale cress | cytosol | 36.52 | 45.65 |
| VIT_16s0098g00600.t01 | Wine grape | cytosol, nucleus, plastid | 53.91 | 45.26 |
| CDY08148 | Canola | cytosol | 36.52 | 45.16 |
| AT5G24660.1 | Thale cress | cytosol, nucleus, plastid | 36.52 | 44.68 |
| KRH64261 | Soybean | nucleus | 46.96 | 44.63 |
| AT3G49570.1 | Thale cress | cytosol | 37.39 | 44.33 |
| CDY08146 | Canola | cytosol | 36.52 | 43.3 |
| Bra017975.1-P | Field mustard | cytosol | 36.52 | 43.3 |
| CDY69515 | Canola | cytosol, nucleus, plastid | 34.78 | 43.01 |
| CDX80461 | Canola | cytosol, nucleus, plastid | 34.78 | 43.01 |
| Bra009783.1-P | Field mustard | cytosol, nucleus, plastid | 34.78 | 43.01 |
| AT3G49580.1 | Thale cress | cytosol, nucleus, plastid | 33.91 | 41.49 |
| CDY05452 | Canola | cytosol, nucleus, plastid | 33.91 | 40.21 |
| Bra020466.1-P | Field mustard | nucleus | 33.91 | 40.21 |
| KRH16959 | Soybean | nucleus | 40.0 | 39.32 |
| CDY05402 | Canola | nucleus | 33.04 | 39.18 |
Protein Annotations
| EnsemblPlants:Solyc03g096770.1.1 | EnsemblPlantsGene:Solyc03g096770.1 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0033554 |
| ncoils:Coil | PANTHER:PTHR34283 | PANTHER:PTHR34283:SF1 | SEG:seg | UniParc:UPI0002767DEC | UniProt:K4BJ95 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:59115462..59115809
Molecular Weight (calculated)
13380.0 Da
IEP (calculated)
8.513
GRAVY (calculated)
-0.830
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPTIAVPST QTTPHHRRET SAVPESEVLR RRNEELEKEL KKSFEREEKM REELQKTWKR LRVAEERLCS QLGEFEAEAV DQARAYRTRV MNLMDQLSLA
101: QKLLQSASVV VPTSQ
101: QKLLQSASVV VPTSQ
1: MGKGGNYVTV AASEVDELRR KNGEMEKAVE EMKKEMLQLW RRTQVAEEAE ERLCSQLAEL EAESLDQARD YHSRIIFLMN ELSRLSSDSA SASP
Arabidopsis Description
LSU2Protein RESPONSE TO LOW SULFUR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR9]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.