Factsheet for Solyc06g065340.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g110190.2.1
Solyc02g086840.2.1
Solyc10g054080.1.1
Solyc11g044880.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71970.1	Solyc02g086840.2.1	AT3G27960.1	21798944
AT1G71970.1	Solyc01g110190.2.1	AT4G39050.1	21798944
AT1G71970.1	Solyc10g054080.1.1	AT4G39050.1	21798944
AT1G71970.1	Solyc11g044880.1.1	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067168	Potato	nucleus, plastid	93.3	91.67
Solyc11g018710.1.1	Tomato	nucleus, plastid	38.84	44.16
VIT_18s0075g00250.t01	Wine grape	nucleus, plastid	38.84	43.72
KRG91792	Soybean	nucleus, plastid	38.84	41.83
KRH34993	Soybean	nucleus, plastid	37.5	41.18
VIT_18s0075g00270.t01	Wine grape	plastid	31.25	37.84
AT1G22680.1	Thale cress	plastid	29.46	35.68
AT1G71970.1	Thale cress	plastid	34.38	34.22
CDY03667	Canola	nucleus, plastid	32.14	34.12
Bra008000.1-P	Field mustard	nucleus, plastid	32.14	34.12
CDX72851	Canola	nucleus, plastid	31.7	33.97
Bra003902.1-P	Field mustard	nucleus, plastid	30.36	33.83
Bra016094.1-P	Field mustard	nucleus, plastid	33.04	33.79
CDX96367	Canola	nucleus, plastid	32.59	33.33
CDY36668	Canola	nucleus, plastid	30.36	33.33
CDX82197	Canola	nucleus, plastid	30.36	33.01
CDX68291	Canola	nucleus, plastid	29.46	32.84

Protein Annotations

EnsemblPlants:Solyc06g065340.1.1	EnsemblPlantsGene:Solyc06g065340.1	InterPro:DUF688	PANTHER:PTHR33696	PANTHER:PTHR33696:SF1	PFAM:PF05097
SEG:seg	UniParc:UPI00027672BD	UniProt:K4C7G3	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr6:-:40759642..40760316

Molecular Weight (calculated)

24966.0 Da

IEP (calculated)

9.657

GRAVY (calculated)

-0.744

Length

224 amino acids

Sequence
(BLAST)

001: MASTLTTPSP TNDVDDHHQS HDTTFSTPLF RSPPPTTRRS TPPSLSSSPS HSSNSSFGSS LSFHDILDDH NSPISPTTPL QFPKGVPFSW EKIPGIPKQI
101: FSKKNNTTTS LGQLLPLMPP PCGNGNNGSS KKITSFLDEF SPRKNVAKSF RKDPFFAAFV ECSKDDQQQY DDDIWKNSSK VPSIRSLSDR FGFISMYTSC
201: KRTCTVSESI VYLPRSRNNY SRKY

Best Arabidopsis Sequence Match ( AT1G22680.1 )
(BLAST)

001: MDTSPRTRIV PTRRSNSVKF SSTVNISTRR SLSSSSSNSL LFSGNSPATP LHPLGIPFSW EKLPGKPKEF SYHRKNESLS NLLPLPPHWS NHSPNTRCKK
101: NTSPAAMRDP FMAALVECSK GATTDGEHTG GESRKVLRKS RSIGLLNLYS SCRRACEVSE SIVYLPKSIA SYDHLHLSTR GRRRR

Arabidopsis Description

T22J18.15 [Source:UniProtKB/TrEMBL;Acc:O80553]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.